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Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome.
Zhou Y, Tang J, Walker MG, Zhang X, Wang J, Hu S, Xu H, Deng Y, Dong J, Ye L, Lin L, Li J, Wang X, Xu H, Pan Y, Lin W, Tian W, Liu J, Wei L, Liu S, Yang H, Yu J, Wang J. Zhou Y, et al. Among authors: li j. Genomics Proteomics Bioinformatics. 2003 Feb;1(1):26-42. doi: 10.1016/s1672-0229(03)01005-2. Genomics Proteomics Bioinformatics. 2003. PMID: 15626331 Free PMC article.
Evolutionary transients in the rice transcriptome.
Wang J, Zhang J, Li R, Zheng H, Li J, Zhang Y, Li H, Ni P, Li S, Li S, Wang J, Liu D, McDermott J, Samudrala R, Liu S, Wang J, Yang H, Yu J, Wong GK. Wang J, et al. Among authors: li s, li j, li h, li r. Genomics Proteomics Bioinformatics. 2010 Dec;8(4):211-28. doi: 10.1016/S1672-0229(10)60023-X. Genomics Proteomics Bioinformatics. 2010. PMID: 21382590 Free PMC article.
The Genomes of Oryza sativa: a history of duplications.
Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C, Zhang J, Zhang Y, Li R, Xu Z, Li S, Li X, Zheng H, Cong L, Lin L, Yin J, Geng J, Li G, Shi J, Liu J, Lv H, Li J, Wang J, Deng Y, Ran L, Shi X, Wang X, Wu Q, Li C, Ren X, Wang J, Wang X, Li D, Liu D, Zhang X, Ji Z, Zhao W, Sun Y, Zhang Z, Bao J, Han Y, Dong L, Ji J, Chen P, Wu S, Liu J, Xiao Y, Bu D, Tan J, Yang L, Ye C, Zhang J, Xu J, Zhou Y, Yu Y, Zhang B, Zhuang S, Wei H, Liu B, Lei M, Yu H, Li Y, Xu H, Wei S, He X, Fang L, Zhang Z, Zhang Y, Huang X, Su Z, Tong W, Li J, Tong Z, Li S, Ye J, Wang L, Fang L, Lei T, Chen C, Chen H, Xu Z, Li H, Huang H, Zhang F, Xu H, Li N, Zhao C, Li S, Dong L, Huang Y, Li L, Xi Y, Qi Q, Li W, Zhang B, Hu W, Zhang Y, Tian X, Jiao Y, Liang X, Jin J, Gao L, Zheng W, Hao B, Liu S, Wang W, Yuan L, Cao M, McDermott J, Samudrala R, Wang J, Wong GK, Yang H. Yu J, et al. Among authors: li s, li c, li d, li y, li j, li g, li w, li h, li x, li n, li l, li r. PLoS Biol. 2005 Feb;3(2):e38. doi: 10.1371/journal.pbio.0030038. Epub 2005 Feb 1. PLoS Biol. 2005. PMID: 15685292 Free PMC article.
The diploid genome sequence of an Asian individual.
Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Zhang J, Guo Y, Feng B, Li H, Lu Y, Fang X, Liang H, Du Z, Li D, Zhao Y, Hu Y, Yang Z, Zheng H, Hellmann I, Inouye M, Pool J, Yi X, Zhao J, Duan J, Zhou Y, Qin J, Ma L, Li G, Yang Z, Zhang G, Yang B, Yu C, Liang F, Li W, Li S, Li D, Ni P, Ruan J, Li Q, Zhu H, Liu D, Lu Z, Li N, Guo G, Zhang J, Ye J, Fang L, Hao Q, Chen Q, Liang Y, Su Y, San A, Ping C, Yang S, Chen F, Li L, Zhou K, Zheng H, Ren Y, Yang L, Gao Y, Yang G, Li Z, Feng X, Kristiansen K, Wong GK, Nielsen R, Durbin R, Bolund L, Zhang X, Li S, Yang H, Wang J. Wang J, et al. Among authors: li s, li d, li y, li j, li z, li g, li w, li h, li n, li l, li q, li r. Nature. 2008 Nov 6;456(7218):60-5. doi: 10.1038/nature07484. Nature. 2008. PMID: 18987735 Free PMC article.
Origin and evolution of new exons in rodents.
Wang W, Zheng H, Yang S, Yu H, Li J, Jiang H, Su J, Yang L, Zhang J, McDermott J, Samudrala R, Wang J, Yang H, Yu J, Kristiansen K, Wong GK, Wang J. Wang W, et al. Among authors: li j. Genome Res. 2005 Sep;15(9):1258-64. doi: 10.1101/gr.3929705. Epub 2005 Aug 18. Genome Res. 2005. PMID: 16109974 Free PMC article.
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing.
Li YH, Zhao SC, Ma JX, Li D, Yan L, Li J, Qi XT, Guo XS, Zhang L, He WM, Chang RZ, Liang QS, Guo Y, Ye C, Wang XB, Tao Y, Guan RX, Wang JY, Liu YL, Jin LG, Zhang XQ, Liu ZX, Zhang LJ, Chen J, Wang KJ, Nielsen R, Li RQ, Chen PY, Li WB, Reif JC, Purugganan M, Wang J, Zhang MC, Wang J, Qiu LJ. Li YH, et al. Among authors: li rq, li d, li j, li wb. BMC Genomics. 2013 Aug 28;14:579. doi: 10.1186/1471-2164-14-579. BMC Genomics. 2013. PMID: 23984715 Free PMC article.
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