Favorov AV - Search Results

1

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.

Favorov AV, Gelfand MS, Gerasimova AV, Ravcheev DA, Mironov AA, Makeev VJ. Favorov AV, et al. Bioinformatics. 2005 May 15;21(10):2240-5. doi: 10.1093/bioinformatics/bti336. Epub 2005 Feb 22. Bioinformatics. 2005. PMID: 15728117

2

Deep and wide digging for binding motifs in ChIP-Seq data.

Kulakovskiy IV, Boeva VA, Favorov AV, Makeev VJ. Kulakovskiy IV, et al. Among authors: favorov av. Bioinformatics. 2010 Oct 15;26(20):2622-3. doi: 10.1093/bioinformatics/btq488. Epub 2010 Aug 24. Bioinformatics. 2010. PMID: 20736340

3

Motif discovery and motif finding from genome-mapped DNase footprint data.

Kulakovskiy IV, Favorov AV, Makeev VJ. Kulakovskiy IV, et al. Among authors: favorov av. Bioinformatics. 2009 Sep 15;25(18):2318-25. doi: 10.1093/bioinformatics/btp434. Epub 2009 Jul 15. Bioinformatics. 2009. PMID: 19605419

4

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data.

Stavrovskaya ED, Niranjan T, Fertig EJ, Wheelan SJ, Favorov AV, Mironov AA. Stavrovskaya ED, et al. Among authors: favorov av. Bioinformatics. 2017 Oct 15;33(20):3158-3165. doi: 10.1093/bioinformatics/btx379. Bioinformatics. 2017. PMID: 29028265 Free PMC article.

5

Exploring massive, genome scale datasets with the GenometriCorr package.

Favorov A, Mularoni L, Cope LM, Medvedeva Y, Mironov AA, Makeev VJ, Wheelan SJ. Favorov A, et al. PLoS Comput Biol. 2012 May;8(5):e1002529. doi: 10.1371/journal.pcbi.1002529. Epub 2012 May 31. PLoS Comput Biol. 2012. PMID: 22693437 Free PMC article.

6

RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA.

Danilova LV, Pervouchine DD, Favorov AV, Mironov AA. Danilova LV, et al. Among authors: favorov av. J Bioinform Comput Biol. 2006 Apr;4(2):589-96. doi: 10.1142/s0219720006001904. J Bioinform Comput Biol. 2006. PMID: 16819804

7

CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation.

Nikulova AA, Favorov AV, Sutormin RA, Makeev VJ, Mironov AA. Nikulova AA, et al. Among authors: favorov av. Nucleic Acids Res. 2012 Jul;40(12):e93. doi: 10.1093/nar/gks235. Epub 2012 Mar 15. Nucleic Acids Res. 2012. PMID: 22422836 Free PMC article.

8

Conserved and species-specific alternative splicing in mammalian genomes.

Nurtdinov RN, Neverov AD, Favorov AV, Mironov AA, Gelfand MS. Nurtdinov RN, et al. Among authors: favorov av. BMC Evol Biol. 2007 Dec 22;7:249. doi: 10.1186/1471-2148-7-249. BMC Evol Biol. 2007. PMID: 18154685 Free PMC article.

9

Correlated Evolution of Nucleotide Positions within Splice Sites in Mammals.

Denisov S, Bazykin G, Favorov A, Mironov A, Gelfand M. Denisov S, et al. PLoS One. 2015 Dec 7;10(12):e0144388. doi: 10.1371/journal.pone.0144388. eCollection 2015. PLoS One. 2015. PMID: 26642327 Free PMC article.

10

Hidden Markov models for evolution and comparative genomics analysis.

Bykova NA, Favorov AV, Mironov AA. Bykova NA, et al. Among authors: favorov av. PLoS One. 2013 Jun 7;8(6):e65012. doi: 10.1371/journal.pone.0065012. Print 2013. PLoS One. 2013. PMID: 23762278 Free PMC article.

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