Karplus M - Search Results

1

Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.

Banerjee A, Yang W, Karplus M, Verdine GL. Banerjee A, et al. Among authors: karplus m. Nature. 2005 Mar 31;434(7033):612-8. doi: 10.1038/nature03458. Nature. 2005. PMID: 15800616

2

The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.

Shigdel UK, Ovchinnikov V, Lee SJ, Shih JA, Karplus M, Nam K, Verdine GL. Shigdel UK, et al. Among authors: karplus m. Nat Commun. 2020 Sep 7;11(1):4437. doi: 10.1038/s41467-020-18290-2. Nat Commun. 2020. PMID: 32895378 Free PMC article.

3

Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM.

Qi Y, Spong MC, Nam K, Karplus M, Verdine GL. Qi Y, et al. Among authors: karplus m. J Biol Chem. 2010 Jan 8;285(2):1468-78. doi: 10.1074/jbc.M109.069799. Epub 2009 Nov 4. J Biol Chem. 2010. PMID: 19889642 Free PMC article.

4

Analysis of an anomalous mutant of MutM DNA glycosylase leads to new insights into the catalytic mechanism.

Nam K, Verdine GL, Karplus M. Nam K, et al. Among authors: karplus m. J Am Chem Soc. 2009 Dec 30;131(51):18208-9. doi: 10.1021/ja907544b. J Am Chem Soc. 2009. PMID: 19961158 Free PMC article.

5

Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.

Qi Y, Spong MC, Nam K, Banerjee A, Jiralerspong S, Karplus M, Verdine GL. Qi Y, et al. Among authors: karplus m. Nature. 2009 Dec 10;462(7274):762-6. doi: 10.1038/nature08561. Nature. 2009. PMID: 20010681 Free PMC article.

6

Strandwise translocation of a DNA glycosylase on undamaged DNA.

Qi Y, Nam K, Spong MC, Banerjee A, Sung RJ, Zhang M, Karplus M, Verdine GL. Qi Y, et al. Among authors: karplus m. Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1086-91. doi: 10.1073/pnas.1111237108. Epub 2012 Jan 4. Proc Natl Acad Sci U S A. 2012. PMID: 22219368 Free PMC article.

7

Enforced presentation of an extrahelical guanine to the lesion recognition pocket of human 8-oxoguanine glycosylase, hOGG1.

Crenshaw CM, Nam K, Oo K, Kutchukian PS, Bowman BR, Karplus M, Verdine GL. Crenshaw CM, et al. Among authors: karplus m. J Biol Chem. 2012 Jul 20;287(30):24916-28. doi: 10.1074/jbc.M111.316497. Epub 2012 Apr 16. J Biol Chem. 2012. PMID: 22511791 Free PMC article.

8

Product-assisted catalysis in base-excision DNA repair.

Fromme JC, Bruner SD, Yang W, Karplus M, Verdine GL. Fromme JC, et al. Among authors: karplus m. Nat Struct Biol. 2003 Mar;10(3):204-11. doi: 10.1038/nsb902. Nat Struct Biol. 2003. PMID: 12592398

9

A structure-based model for the synthesis and hydrolysis of ATP by F1-ATPase.

Gao YQ, Yang W, Karplus M. Gao YQ, et al. Among authors: karplus m. Cell. 2005 Oct 21;123(2):195-205. doi: 10.1016/j.cell.2005.10.001. Cell. 2005. PMID: 16239139 Free article.

10

Conformational sampling via a self-regulating effective energy surface.

Bitetti-Putzer R, Dinner AR, Yang W, Karplus M. Bitetti-Putzer R, et al. Among authors: karplus m. J Chem Phys. 2006 May 7;124(17):174901. doi: 10.1063/1.2171194. J Chem Phys. 2006. PMID: 16689598

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