He S - Search Results

1

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.

Li D, Fu Y, Sun R, Ling CX, Wei Y, Zhou H, Zeng R, Yang Q, He S, Gao W. Li D, et al. Among authors: he s. Bioinformatics. 2005 Jul 1;21(13):3049-50. doi: 10.1093/bioinformatics/bti439. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817687

2

pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry.

Wang LH, Li DQ, Fu Y, Wang HP, Zhang JF, Yuan ZF, Sun RX, Zeng R, He SM, Gao W. Wang LH, et al. Rapid Commun Mass Spectrom. 2007;21(18):2985-91. doi: 10.1002/rcm.3173. Rapid Commun Mass Spectrom. 2007. PMID: 17702057

3

Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences.

Fu Y, Jia W, Lu Z, Wang H, Yuan Z, Chi H, Li Y, Xiu L, Wang W, Liu C, Wang L, Sun R, Gao W, Qian X, He SM. Fu Y, et al. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S50. doi: 10.1186/1471-2105-10-S1-S50. BMC Bioinformatics. 2009. PMID: 19208153 Free PMC article.

4

Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing.

Li Y, Chi H, Wang LH, Wang HP, Fu Y, Yuan ZF, Li SJ, Liu YS, Sun RX, Zeng R, He SM. Li Y, et al. Rapid Commun Mass Spectrom. 2010 Mar;24(6):807-14. doi: 10.1002/rcm.4448. Rapid Commun Mass Spectrom. 2010. PMID: 20187083

5

Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate.

Ye D, Fu Y, Sun RX, Wang HP, Yuan ZF, Chi H, He SM. Ye D, et al. Bioinformatics. 2010 Jun 15;26(12):i399-406. doi: 10.1093/bioinformatics/btq185. Bioinformatics. 2010. PMID: 20529934 Free PMC article.

6

Speeding up tandem mass spectrometry-based database searching by longest common prefix.

Zhou C, Chi H, Wang LH, Li Y, Wu YJ, Fu Y, Sun RX, He SM. Zhou C, et al. BMC Bioinformatics. 2010 Nov 25;11:577. doi: 10.1186/1471-2105-11-577. BMC Bioinformatics. 2010. PMID: 21108792 Free PMC article.

7

Preprocessing of tandem mass spectrometric data based on decision tree classification.

Zhang JF, He SM, Cai JJ, Cao XJ, Sun RX, Fu Y, Zeng R, Gao W. Zhang JF, et al. Genomics Proteomics Bioinformatics. 2005 Nov;3(4):231-7. doi: 10.1016/s1672-0229(05)03032-9. Genomics Proteomics Bioinformatics. 2005. PMID: 16689691 Free PMC article.

8

IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics.

Li D, Gao W, Ling CX, Wang X, Sun R, He S. Li D, et al. Among authors: he s. Bioinformatics. 2006 Oct 15;22(20):2572-3. doi: 10.1093/bioinformatics/btl410. Epub 2006 Aug 31. Bioinformatics. 2006. PMID: 16945944

9

Predicting molecular formulas of fragment ions with isotope patterns in tandem mass spectra.

Zhang J, Gao W, Cai J, He S, Zeng R, Chen R. Zhang J, et al. Among authors: he s. IEEE/ACM Trans Comput Biol Bioinform. 2005 Jul-Sep;2(3):217-30. doi: 10.1109/TCBB.2005.43. IEEE/ACM Trans Comput Biol Bioinform. 2005. PMID: 17044185

10

An SVM scorer for more sensitive and reliable peptide identification via tandem mass spectrometry.

Wang H, Fu Y, Sun R, He S, Zeng R, Gao W. Wang H, et al. Among authors: he s. Pac Symp Biocomput. 2006:303-14. Pac Symp Biocomput. 2006. PMID: 17094248 Free article.

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