van Berkum NL - Search Results

1

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

Radonjic M, Andrau JC, Lijnzaad P, Kemmeren P, Kockelkorn TT, van Leenen D, van Berkum NL, Holstege FC. Radonjic M, et al. Among authors: van berkum nl. Mol Cell. 2005 Apr 15;18(2):171-83. doi: 10.1016/j.molcel.2005.03.010. Mol Cell. 2005. PMID: 15837421 Free article.

2

Protein interaction verification and functional annotation by integrated analysis of genome-scale data.

Kemmeren P, van Berkum NL, Vilo J, Bijma T, Donders R, Brazma A, Holstege FC. Kemmeren P, et al. Among authors: van berkum nl. Mol Cell. 2002 May;9(5):1133-43. doi: 10.1016/s1097-2765(02)00531-2. Mol Cell. 2002. PMID: 12049748 Free article.

3

A consensus of core protein complex compositions for Saccharomyces cerevisiae.

Benschop JJ, Brabers N, van Leenen D, Bakker LV, van Deutekom HW, van Berkum NL, Apweiler E, Lijnzaad P, Holstege FC, Kemmeren P. Benschop JJ, et al. Among authors: van berkum nl. Mol Cell. 2010 Jun 25;38(6):916-28. doi: 10.1016/j.molcel.2010.06.002. Mol Cell. 2010. PMID: 20620961 Free article.

4

DNA microarrays: raising the profile.

van Berkum NL, Holstege FC. van Berkum NL, et al. Curr Opin Biotechnol. 2001 Feb;12(1):48-52. doi: 10.1016/s0958-1669(00)00173-7. Curr Opin Biotechnol. 2001. PMID: 11167072 Review.

5

Mediator-dependent recruitment of TFIIH modules in preinitiation complex.

Esnault C, Ghavi-Helm Y, Brun S, Soutourina J, Van Berkum N, Boschiero C, Holstege F, Werner M. Esnault C, et al. Mol Cell. 2008 Aug 8;31(3):337-46. doi: 10.1016/j.molcel.2008.06.021. Mol Cell. 2008. PMID: 18691966 Free article.

6

A high resolution protein interaction map of the yeast Mediator complex.

Guglielmi B, van Berkum NL, Klapholz B, Bijma T, Boube M, Boschiero C, Bourbon HM, Holstege FC, Werner M. Guglielmi B, et al. Among authors: van berkum nl. Nucleic Acids Res. 2004 Oct 11;32(18):5379-91. doi: 10.1093/nar/gkh878. Print 2004. Nucleic Acids Res. 2004. PMID: 15477388 Free PMC article.

7

Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits.

Albert TK, Lemaire M, van Berkum NL, Gentz R, Collart MA, Timmers HT. Albert TK, et al. Among authors: van berkum nl. Nucleic Acids Res. 2000 Feb 1;28(3):809-17. doi: 10.1093/nar/28.3.809. Nucleic Acids Res. 2000. PMID: 10637334 Free PMC article.

8

Determining spatial chromatin organization of large genomic regions using 5C technology.

van Berkum NL, Dekker J. van Berkum NL, et al. Methods Mol Biol. 2009;567:189-213. doi: 10.1007/978-1-60327-414-2_13. Methods Mol Biol. 2009. PMID: 19588094 Free PMC article. Review.

9

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J. Lieberman-Aiden E, et al. Among authors: van berkum nl. Science. 2009 Oct 9;326(5950):289-93. doi: 10.1126/science.1181369. Science. 2009. PMID: 19815776 Free PMC article.

10

Hi-C: a method to study the three-dimensional architecture of genomes.

van Berkum NL, Lieberman-Aiden E, Williams L, Imakaev M, Gnirke A, Mirny LA, Dekker J, Lander ES. van Berkum NL, et al. J Vis Exp. 2010 May 6;(39):1869. doi: 10.3791/1869. J Vis Exp. 2010. PMID: 20461051 Free PMC article.

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