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Multiple-laboratory comparison of microarray platforms.
Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Martínez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W. Irizarry RA, et al. Among authors: quackenbush j. Nat Methods. 2005 May;2(5):345-50. doi: 10.1038/nmeth756. Epub 2005 Apr 21. Nat Methods. 2005. PMID: 15846361 Free article.
Independence and reproducibility across microarray platforms.
Larkin JE, Frank BC, Gavras H, Sultana R, Quackenbush J. Larkin JE, et al. Among authors: quackenbush j. Nat Methods. 2005 May;2(5):337-44. doi: 10.1038/nmeth757. Epub 2005 Apr 21. Nat Methods. 2005. PMID: 15846360 Free article.
Response to Shields: 'MIAME, we have a problem'.
Quackenbush J, Irizarry RA. Quackenbush J, et al. Trends Genet. 2006 Sep;22(9):471-2. doi: 10.1016/j.tig.2006.07.007. Epub 2006 Jul 21. Trends Genet. 2006. PMID: 16859802 No abstract available.
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. Brazma A, et al. Among authors: quackenbush j. Nat Genet. 2001 Dec;29(4):365-71. doi: 10.1038/ng1201-365. Nat Genet. 2001. PMID: 11726920
Top-down standards will not serve systems biology.
Quackenbush J, Stoeckert C, Ball C, Brazma A, Gentleman R, Huber W, Irizarry R, Salit M, Sherlock G, Spellman P, Winegarden N. Quackenbush J, et al. Nature. 2006 Mar 2;440(7080):24. doi: 10.1038/440024a. Nature. 2006. PMID: 16511469 No abstract available.
366 results