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Page 1
Standardizing global gene expression analysis between laboratories and across platforms.
Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H; Members of the Toxicogenomics Research Consortium. Bammler T, et al. Among authors: lobenhofer ek. Nat Methods. 2005 May;2(5):351-6. doi: 10.1038/nmeth754. Epub 2005 Apr 21. Nat Methods. 2005. PMID: 15846362
Profiles of global gene expression in ionizing-radiation-damaged human diploid fibroblasts reveal synchronization behind the G1 checkpoint in a G0-like state of quiescence.
Zhou T, Chou JW, Simpson DA, Zhou Y, Mullen TE, Medeiros M, Bushel PR, Paules RS, Yang X, Hurban P, Lobenhofer EK, Kaufmann WK. Zhou T, et al. Among authors: lobenhofer ek. Environ Health Perspect. 2006 Apr;114(4):553-9. doi: 10.1289/ehp.8026. Environ Health Perspect. 2006. PMID: 16581545 Free PMC article.
Rat toxicogenomic study reveals analytical consistency across microarray platforms.
Guo L, Lobenhofer EK, Wang C, Shippy R, Harris SC, Zhang L, Mei N, Chen T, Herman D, Goodsaid FM, Hurban P, Phillips KL, Xu J, Deng X, Sun YA, Tong W, Dragan YP, Shi L. Guo L, et al. Among authors: lobenhofer ek. Nat Biotechnol. 2006 Sep;24(9):1162-9. doi: 10.1038/nbt1238. Nat Biotechnol. 2006. PMID: 17061323
Multicenter study of acetaminophen hepatotoxicity reveals the importance of biological endpoints in genomic analyses.
Beyer RP, Fry RC, Lasarev MR, McConnachie LA, Meira LB, Palmer VS, Powell CL, Ross PK, Bammler TK, Bradford BU, Cranson AB, Cunningham ML, Fannin RD, Higgins GM, Hurban P, Kayton RJ, Kerr KF, Kosyk O, Lobenhofer EK, Sieber SO, Vliet PA, Weis BK, Wolfinger R, Woods CG, Freedman JH, Linney E, Kaufmann WK, Kavanagh TJ, Paules RS, Rusyn I, Samson LD, Spencer PS, Suk W, Tennant RJ, Zarbl H; Members of the Toxicogenomics Research Consortium. Beyer RP, et al. Among authors: lobenhofer ek. Toxicol Sci. 2007 Sep;99(1):326-37. doi: 10.1093/toxsci/kfm150. Epub 2007 Jun 11. Toxicol Sci. 2007. PMID: 17562736
Variation in the hepatic gene expression in individual male Fischer rats.
Boorman GA, Irwin RD, Vallant MK, Gerken DK, Lobenhofer EK, Hejtmancik MR, Hurban P, Brys AM, Travlos GS, Parker JS, Portier CJ. Boorman GA, et al. Among authors: lobenhofer ek. Toxicol Pathol. 2005;33(1):102-10. doi: 10.1080/01926230590522211. Toxicol Pathol. 2005. PMID: 15805061
Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project.
Patterson TA, Lobenhofer EK, Fulmer-Smentek SB, Collins PJ, Chu TM, Bao W, Fang H, Kawasaki ES, Hager J, Tikhonova IR, Walker SJ, Zhang L, Hurban P, de Longueville F, Fuscoe JC, Tong W, Shi L, Wolfinger RD. Patterson TA, et al. Among authors: lobenhofer ek. Nat Biotechnol. 2006 Sep;24(9):1140-50. doi: 10.1038/nbt1242. Nat Biotechnol. 2006. PMID: 16964228
Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype.
Lobenhofer EK, Auman JT, Blackshear PE, Boorman GA, Bushel PR, Cunningham ML, Fostel JM, Gerrish K, Heinloth AN, Irwin RD, Malarkey DE, Merrick BA, Sieber SO, Tucker CJ, Ward SM, Wilson RE, Hurban P, Tennant RW, Paules RS. Lobenhofer EK, et al. Genome Biol. 2008;9(6):R100. doi: 10.1186/gb-2008-9-6-r100. Epub 2008 Jun 20. Genome Biol. 2008. PMID: 18570634 Free PMC article.
Progress in the application of DNA microarrays.
Lobenhofer EK, Bushel PR, Afshari CA, Hamadeh HK. Lobenhofer EK, et al. Environ Health Perspect. 2001 Sep;109(9):881-91. doi: 10.1289/ehp.01109881. Environ Health Perspect. 2001. PMID: 11673116 Free PMC article. Review.
Consistency of predictive signature genes and classifiers generated using different microarray platforms.
Fan X, Lobenhofer EK, Chen M, Shi W, Huang J, Luo J, Zhang J, Walker SJ, Chu TM, Li L, Wolfinger R, Bao W, Paules RS, Bushel PR, Li J, Shi T, Nikolskaya T, Nikolsky Y, Hong H, Deng Y, Cheng Y, Fang H, Shi L, Tong W. Fan X, et al. Among authors: lobenhofer ek. Pharmacogenomics J. 2010 Aug;10(4):247-57. doi: 10.1038/tpj.2010.34. Pharmacogenomics J. 2010. PMID: 20676064 Free PMC article.
43 results