Ortiz AR - Search Results

1

A new progressive-iterative algorithm for multiple structure alignment.

Lupyan D, Leo-Macias A, Ortiz AR. Lupyan D, et al. Among authors: ortiz ar. Bioinformatics. 2005 Aug 1;21(15):3255-63. doi: 10.1093/bioinformatics/bti527. Epub 2005 Jun 7. Bioinformatics. 2005. PMID: 15941743

2

An analysis of core deformations in protein superfamilies.

Leo-Macias A, Lopez-Romero P, Lupyan D, Zerbino D, Ortiz AR. Leo-Macias A, et al. Among authors: ortiz ar. Biophys J. 2005 Feb;88(2):1291-9. doi: 10.1529/biophysj.104.052449. Epub 2004 Nov 12. Biophys J. 2005. PMID: 15542556 Free PMC article.

3

Core deformations in protein families: a physical perspective.

Leo-Macias A, Lopez-Romero P, Lupyan D, Zerbino D, Ortiz AR. Leo-Macias A, et al. Among authors: ortiz ar. Biophys Chem. 2005 Apr 1;115(2-3):125-8. doi: 10.1016/j.bpc.2004.12.016. Epub 2005 Jan 18. Biophys Chem. 2005. PMID: 15752593

4

An efficient conformational sampling method for homology modeling.

Han R, Leo-Macias A, Zerbino D, Bastolla U, Contreras-Moreira B, Ortiz AR. Han R, et al. Among authors: ortiz ar. Proteins. 2008 Apr;71(1):175-88. doi: 10.1002/prot.21672. Proteins. 2008. PMID: 17985353

5

Computational approaches to model ligand selectivity in drug design.

Ortiz AR, Gomez-Puertas P, Leo-Macias A, Lopez-Romero P, Lopez-Viñas E, Morreale A, Murcia M, Wang K. Ortiz AR, et al. Curr Top Med Chem. 2006;6(1):41-55. doi: 10.2174/156802606775193338. Curr Top Med Chem. 2006. PMID: 16454757 Review.

6

An aspartate residue in the external vestibule of GLYT2 (glycine transporter 2) controls cation access and transport coupling.

Pérez-Siles G, Núñez E, Morreale A, Jiménez E, Leo-Macías A, Pita G, Cherubino F, Sangaletti R, Bossi E, Ortíz AR, Aragón C, López-Corcuera B. Pérez-Siles G, et al. Among authors: ortiz ar. Biochem J. 2012 Mar 1;442(2):323-34. doi: 10.1042/BJ20110247. Biochem J. 2012. PMID: 22132725 Free article.

7

Molecular basis of the differential interaction with lithium of glycine transporters GLYT1 and GLYT2.

Pérez-Siles G, Morreale A, Leo-Macías A, Pita G, Ortíz AR, Aragón C, López-Corcuera B. Pérez-Siles G, et al. Among authors: ortiz ar. J Neurochem. 2011 Jul;118(2):195-204. doi: 10.1111/j.1471-4159.2011.07309.x. Epub 2011 Jun 2. J Neurochem. 2011. PMID: 21574997 Free article.

8

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-García A, Abia D, Ortiz AR, Bastolla U. Pascual-García A, et al. Among authors: ortiz ar. PLoS Comput Biol. 2009 Mar;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331. Epub 2009 Mar 27. PLoS Comput Biol. 2009. PMID: 19325884 Free PMC article.

9

Gaussian mapping of chemical fragments in ligand binding sites.

Wang K, Murcia M, Constans P, Pérez C, Ortiz AR. Wang K, et al. Among authors: ortiz ar. J Comput Aided Mol Des. 2004 Feb;18(2):101-18. doi: 10.1023/b:jcam.0000030033.26053.40. J Comput Aided Mol Des. 2004. PMID: 15287697

10

Virtual screening with flexible docking and COMBINE-based models. Application to a series of factor Xa inhibitors.

Murcia M, Ortiz AR. Murcia M, et al. Among authors: ortiz ar. J Med Chem. 2004 Feb 12;47(4):805-20. doi: 10.1021/jm030137a. J Med Chem. 2004. PMID: 14761183

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