Swamidass SJ - Search Results

1

Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity.

Swamidass SJ, Chen J, Bruand J, Phung P, Ralaivola L, Baldi P. Swamidass SJ, et al. Bioinformatics. 2005 Jun;21 Suppl 1:i359-68. doi: 10.1093/bioinformatics/bti1055. Bioinformatics. 2005. PMID: 15961479

2

Graph kernels for chemical informatics.

Ralaivola L, Swamidass SJ, Saigo H, Baldi P. Ralaivola L, et al. Among authors: swamidass sj. Neural Netw. 2005 Oct;18(8):1093-110. doi: 10.1016/j.neunet.2005.07.009. Epub 2005 Sep 12. Neural Netw. 2005. PMID: 16157471

3

ChemDB: a public database of small molecules and related chemoinformatics resources.

Chen J, Swamidass SJ, Dou Y, Bruand J, Baldi P. Chen J, et al. Among authors: swamidass sj. Bioinformatics. 2005 Nov 15;21(22):4133-9. doi: 10.1093/bioinformatics/bti683. Epub 2005 Sep 20. Bioinformatics. 2005. PMID: 16174682

4

One- to four-dimensional kernels for virtual screening and the prediction of physical, chemical, and biological properties.

Azencott CA, Ksikes A, Swamidass SJ, Chen JH, Ralaivola L, Baldi P. Azencott CA, et al. Among authors: swamidass sj. J Chem Inf Model. 2007 May-Jun;47(3):965-74. doi: 10.1021/ci600397p. Epub 2007 Mar 6. J Chem Inf Model. 2007. PMID: 17338509

5

ChemDB update--full-text search and virtual chemical space.

Chen JH, Linstead E, Swamidass SJ, Wang D, Baldi P. Chen JH, et al. Among authors: swamidass sj. Bioinformatics. 2007 Sep 1;23(17):2348-51. doi: 10.1093/bioinformatics/btm341. Epub 2007 Jun 28. Bioinformatics. 2007. PMID: 17599932

6

Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants.

Danziger SA, Swamidass SJ, Zeng J, Dearth LR, Lu Q, Chen JH, Cheng J, Hoang VP, Saigo H, Luo R, Baldi P, Brachmann RK, Lathrop RH. Danziger SA, et al. Among authors: swamidass sj. IEEE/ACM Trans Comput Biol Bioinform. 2006 Apr-Jun;3(2):114-25. doi: 10.1109/TCBB.2006.22. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17048398 Free PMC article.

7

Bounds and algorithms for fast exact searches of chemical fingerprints in linear and sublinear time.

Swamidass SJ, Baldi P. Swamidass SJ, et al. J Chem Inf Model. 2007 Mar-Apr;47(2):302-17. doi: 10.1021/ci600358f. Epub 2007 Feb 28. J Chem Inf Model. 2007. PMID: 17326616 Free PMC article.

8

Mathematical correction for fingerprint similarity measures to improve chemical retrieval.

Swamidass SJ, Baldi P. Swamidass SJ, et al. J Chem Inf Model. 2007 May-Jun;47(3):952-64. doi: 10.1021/ci600526a. Epub 2007 Apr 20. J Chem Inf Model. 2007. PMID: 17444629

9

Discovery of power-laws in chemical space.

Benz RW, Swamidass SJ, Baldi P. Benz RW, et al. Among authors: swamidass sj. J Chem Inf Model. 2008 Jun;48(6):1138-51. doi: 10.1021/ci700353m. Epub 2008 Jun 4. J Chem Inf Model. 2008. PMID: 18522387

10

A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval.

Swamidass SJ, Azencott CA, Daily K, Baldi P. Swamidass SJ, et al. Bioinformatics. 2010 May 15;26(10):1348-56. doi: 10.1093/bioinformatics/btq140. Epub 2010 Apr 7. Bioinformatics. 2010. PMID: 20378557 Free PMC article.

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