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Page 1
Protein-Protein Docking Benchmark 2.0: an update.
Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z. Mintseris J, et al. Among authors: janin j. Proteins. 2005 Aug 1;60(2):214-6. doi: 10.1002/prot.20560. Proteins. 2005. PMID: 15981264
Protein-protein docking benchmark version 4.0.
Hwang H, Vreven T, Janin J, Weng Z. Hwang H, et al. Among authors: janin j. Proteins. 2010 Nov 15;78(15):3111-4. doi: 10.1002/prot.22830. Proteins. 2010. PMID: 20806234 Free PMC article.
A protein-protein docking benchmark.
Chen R, Mintseris J, Janin J, Weng Z. Chen R, et al. Among authors: janin j. Proteins. 2003 Jul 1;52(1):88-91. doi: 10.1002/prot.10390. Proteins. 2003. PMID: 12784372
Protein-protein docking benchmark version 3.0.
Hwang H, Pierce B, Mintseris J, Janin J, Weng Z. Hwang H, et al. Among authors: janin j. Proteins. 2008 Nov 15;73(3):705-9. doi: 10.1002/prot.22106. Proteins. 2008. PMID: 18491384 Free PMC article.
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.
Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, Perez-Cano L, Pallara C, Jimenez B, Fernandez-Recio J, Flores S, Pacella M, Praneeth Kilambi K, Gray JJ, Popov P, Grudinin S, Esquivel-Rodríguez J, Kihara D, Zhao N, Korkin D, Zhu X, Demerdash ON, Mitchell JC, Kanamori E, Tsuchiya Y, Nakamura H, Lee H, Park H, Seok C, Sarmiento J, Liang S, Teraguchi S, Standley DM, Shimoyama H, Terashi G, Takeda-Shitaka M, Iwadate M, Umeyama H, Beglov D, Hall DR, Kozakov D, Vajda S, Pierce BG, Hwang H, Vreven T, Weng Z, Huang Y, Li H, Yang X, Ji X, Liu S, Xiao Y, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Velankar S, Janin J, Wodak SJ, Baker D. Moretti R, et al. Among authors: janin j. Proteins. 2013 Nov;81(11):1980-7. doi: 10.1002/prot.24356. Epub 2013 Aug 23. Proteins. 2013. PMID: 23843247 Free PMC article.
A structure-based benchmark for protein-protein binding affinity.
Kastritis PL, Moal IH, Hwang H, Weng Z, Bates PA, Bonvin AM, Janin J. Kastritis PL, et al. Among authors: janin j. Protein Sci. 2011 Mar;20(3):482-91. doi: 10.1002/pro.580. Epub 2011 Feb 16. Protein Sci. 2011. PMID: 21213247 Free PMC article.
Modeling of protein interactions in genomes.
Vajda S, Vakser IA, Sternberg MJ, Janin J. Vajda S, et al. Among authors: janin j. Proteins. 2002 Jun 1;47(4):444-6. doi: 10.1002/prot.10112. Proteins. 2002. PMID: 12001222 No abstract available.
Community-wide assessment of protein-interface modeling suggests improvements to design methodology.
Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, Ko JS, Lee H, Seok C, Bourquard T, Bernauer J, Poupon A, Azé J, Soner S, Ovali SK, Ozbek P, Tal NB, Haliloglu T, Hwang H, Vreven T, Pierce BG, Weng Z, Pérez-Cano L, Pons C, Fernández-Recio J, Jiang F, Yang F, Gong X, Cao L, Xu X, Liu B, Wang P, Li C, Wang C, Robert CH, Guharoy M, Liu S, Huang Y, Li L, Guo D, Chen Y, Xiao Y, London N, Itzhaki Z, Schueler-Furman O, Inbar Y, Potapov V, Cohen M, Schreiber G, Tsuchiya Y, Kanamori E, Standley DM, Nakamura H, Kinoshita K, Driggers CM, Hall RG, Morgan JL, Hsu VL, Zhan J, Yang Y, Zhou Y, Kastritis PL, Bonvin AM, Zhang W, Camacho CJ, Kilambi KP, Sircar A, Gray JJ, Ohue M, Uchikoga N, Matsuzaki Y, Ishida T, Akiyama Y, Khashan R, Bush S, Fouches D, Tropsha A, Esquivel-Rodríguez J, Kihara D, Stranges PB, Jacak R, Kuhlman B, Huang SY, Zou X, Wodak SJ, Janin J, Baker D. Fleishman SJ, et al. Among authors: janin j. J Mol Biol. 2011 Nov 25;414(2):289-302. doi: 10.1016/j.jmb.2011.09.031. Epub 2011 Sep 29. J Mol Biol. 2011. PMID: 22001016 Free PMC article.
The targets of CAPRI rounds 3-5.
Janin J. Janin J. Proteins. 2005 Aug 1;60(2):170-5. doi: 10.1002/prot.20553. Proteins. 2005. PMID: 15981267
212 results