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Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database.
Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, Aebersold R, Eng J, Hancock WS, Hefta SA, Meyer H, Paik YK, Yoo JS, Ping P, Pounds J, Adkins J, Qian X, Wang R, Wasinger V, Wu CY, Zhao X, Zeng R, Archakov A, Tsugita A, Beer I, Pandey A, Pisano M, Andrews P, Tammen H, Speicher DW, Hanash SM. Omenn GS, et al. Among authors: hermjakob h. Proteomics. 2005 Aug;5(13):3226-45. doi: 10.1002/pmic.200500358. Proteomics. 2005. PMID: 16104056 Free article.
Swissknife - 'lazy parsing' of SWISS-PROT entries.
Hermjakob H, Fleischmann W, Apweiler R. Hermjakob H, et al. Bioinformatics. 1999 Sep;15(9):771-2. doi: 10.1093/bioinformatics/15.9.771. Bioinformatics. 1999. PMID: 10498781
The proteomics standards initiative.
Orchard S, Hermjakob H, Apweiler R. Orchard S, et al. Among authors: hermjakob h. Proteomics. 2003 Jul;3(7):1374-6. doi: 10.1002/pmic.200300496. Proteomics. 2003. PMID: 12872238
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, Lappe M, Li Y, Zeng R, Rana D, Nikolski M, Husi H, Brun C, Shanker K, Grant SG, Sander C, Bork P, Zhu W, Pandey A, Brazma A, Jacq B, Vidal M, Sherman D, Legrain P, Cesareni G, Xenarios I, Eisenberg D, Steipe B, Hogue C, Apweiler R. Hermjakob H, et al. Nat Biotechnol. 2004 Feb;22(2):177-83. doi: 10.1038/nbt926. Nat Biotechnol. 2004. PMID: 14755292
A common open representation of mass spectrometry data and its application to proteomics research.
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. Pedrioli PG, et al. Among authors: hermjakob h. Nat Biotechnol. 2004 Nov;22(11):1459-66. doi: 10.1038/nbt1031. Nat Biotechnol. 2004. PMID: 15529173
295 results