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Chemical effects in biological systems--data dictionary (CEBS-DD): a compendium of terms for the capture and integration of biological study design description, conventional phenotypes, and 'omics data.
Fostel J, Choi D, Zwickl C, Morrison N, Rashid A, Hasan A, Bao W, Richard A, Tong W, Bushel PR, Brown R, Bruno M, Cunningham ML, Dix D, Eastin W, Frade C, Garcia A, Heinloth A, Irwin R, Madenspacher J, Merrick BA, Papoian T, Paules R, Rocca-Serra P, Sansone AS, Stevens J, Tomer K, Yang C, Waters M. Fostel J, et al. Among authors: bushel pr. Toxicol Sci. 2005 Dec;88(2):585-601. doi: 10.1093/toxsci/kfi315. Epub 2005 Sep 8. Toxicol Sci. 2005. PMID: 16150882
Toward a checklist for exchange and interpretation of data from a toxicology study.
Fostel JM, Burgoon L, Zwickl C, Lord P, Corton JC, Bushel PR, Cunningham M, Fan L, Edwards SW, Hester S, Stevens J, Tong W, Waters M, Yang C, Tennant R. Fostel JM, et al. Among authors: bushel pr. Toxicol Sci. 2007 Sep;99(1):26-34. doi: 10.1093/toxsci/kfm090. Epub 2007 Apr 17. Toxicol Sci. 2007. PMID: 17442663
CEBS--Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data.
Waters M, Stasiewicz S, Merrick BA, Tomer K, Bushel P, Paules R, Stegman N, Nehls G, Yost KJ, Johnson CH, Gustafson SF, Xirasagar S, Xiao N, Huang CC, Boyer P, Chan DD, Pan Q, Gong H, Taylor J, Choi D, Rashid A, Ahmed A, Howle R, Selkirk J, Tennant R, Fostel J. Waters M, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D892-900. doi: 10.1093/nar/gkm755. Epub 2007 Oct 25. Nucleic Acids Res. 2008. PMID: 17962311 Free PMC article.
Gene expression analysis reveals chemical-specific profiles.
Hamadeh HK, Bushel PR, Jayadev S, Martin K, DiSorbo O, Sieber S, Bennett L, Tennant R, Stoll R, Barrett JC, Blanchard K, Paules RS, Afshari CA. Hamadeh HK, et al. Among authors: bushel pr. Toxicol Sci. 2002 Jun;67(2):219-31. doi: 10.1093/toxsci/67.2.219. Toxicol Sci. 2002. PMID: 12011481
Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype.
Lobenhofer EK, Auman JT, Blackshear PE, Boorman GA, Bushel PR, Cunningham ML, Fostel JM, Gerrish K, Heinloth AN, Irwin RD, Malarkey DE, Merrick BA, Sieber SO, Tucker CJ, Ward SM, Wilson RE, Hurban P, Tennant RW, Paules RS. Lobenhofer EK, et al. Among authors: bushel pr. Genome Biol. 2008;9(6):R100. doi: 10.1186/gb-2008-9-6-r100. Epub 2008 Jun 20. Genome Biol. 2008. PMID: 18570634 Free PMC article.
122 results