Ulintz PJ - Search Results

1

Improved classification of mass spectrometry database search results using newer machine learning approaches.

Ulintz PJ, Zhu J, Qin ZS, Andrews PC. Ulintz PJ, et al. Mol Cell Proteomics. 2006 Mar;5(3):497-509. doi: 10.1074/mcp.M500233-MCP200. Epub 2005 Nov 30. Mol Cell Proteomics. 2006. PMID: 16321970 Free article.

2

Analysis of the outer membrane proteome of Caulobacter crescentus by two-dimensional electrophoresis and mass spectrometry.

Phadke ND, Molloy MP, Steinhoff SA, Ulintz PJ, Andrews PC, Maddock JR. Phadke ND, et al. Among authors: ulintz pj. Proteomics. 2001 May;1(5):705-20. doi: 10.1002/1615-9861(200104)1:5<705::AID-PROT705>3.0.CO;2-N. Proteomics. 2001. PMID: 11678040

3

Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence.

Ulintz PJ, Bodenmiller B, Andrews PC, Aebersold R, Nesvizhskii AI. Ulintz PJ, et al. Mol Cell Proteomics. 2008 Jan;7(1):71-87. doi: 10.1074/mcp.M700128-MCP200. Epub 2007 Sep 13. Mol Cell Proteomics. 2008. PMID: 17872894 Free article.

4

Global topology analysis of pancreatic zymogen granule membrane proteins.

Chen X, Ulintz PJ, Simon ES, Williams JA, Andrews PC. Chen X, et al. Among authors: ulintz pj. Mol Cell Proteomics. 2008 Dec;7(12):2323-36. doi: 10.1074/mcp.M700575-MCP200. Epub 2008 Aug 4. Mol Cell Proteomics. 2008. PMID: 18682380 Free PMC article.

5

Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification.

Ulintz PJ, Yocum AK, Bodenmiller B, Aebersold R, Andrews PC, Nesvizhskii AI. Ulintz PJ, et al. J Proteome Res. 2009 Feb;8(2):887-99. doi: 10.1021/pr800535h. J Proteome Res. 2009. PMID: 19072539 Free PMC article.

6

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ. Fermin D, et al. Genome Biol. 2006;7(4):R35. doi: 10.1186/gb-2006-7-4-r35. Epub 2006 Apr 28. Genome Biol. 2006. PMID: 16646984 Free PMC article.

7

Bioinformatics Analysis of Whole Exome Sequencing Data.

Ulintz PJ, Wu W, Gates CM. Ulintz PJ, et al. Methods Mol Biol. 2019;1881:277-318. doi: 10.1007/978-1-4939-8876-1_21. Methods Mol Biol. 2019. PMID: 30350213

8

Nuclear lamina genetic variants, including a truncated LAP2, in twins and siblings with nonalcoholic fatty liver disease.

Brady GF, Kwan R, Ulintz PJ, Nguyen P, Bassirian S, Basrur V, Nesvizhskii AI, Loomba R, Omary MB. Brady GF, et al. Among authors: ulintz pj. Hepatology. 2018 May;67(5):1710-1725. doi: 10.1002/hep.29522. Epub 2018 Mar 24. Hepatology. 2018. PMID: 28902428 Free PMC article.

9

Intra-tumor genetic heterogeneity in rectal cancer.

Hardiman KM, Ulintz PJ, Kuick RD, Hovelson DH, Gates CM, Bhasi A, Rodrigues Grant A, Liu J, Cani AK, Greenson JK, Tomlins SA, Fearon ER. Hardiman KM, et al. Among authors: ulintz pj. Lab Invest. 2016 Jan;96(1):4-15. doi: 10.1038/labinvest.2015.131. Epub 2015 Nov 16. Lab Invest. 2016. PMID: 26568296 Free PMC article.

10

Germline Genetic Features of Young Individuals With Colorectal Cancer.

Stoffel EM, Koeppe E, Everett J, Ulintz P, Kiel M, Osborne J, Williams L, Hanson K, Gruber SB, Rozek LS. Stoffel EM, et al. Gastroenterology. 2018 Mar;154(4):897-905.e1. doi: 10.1053/j.gastro.2017.11.004. Epub 2017 Nov 14. Gastroenterology. 2018. PMID: 29146522 Free PMC article.

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