Bertone P - Search Results

1

Design optimization methods for genomic DNA tiling arrays.

Bertone P, Trifonov V, Rozowsky JS, Schubert F, Emanuelsson O, Karro J, Kao MY, Snyder M, Gerstein M. Bertone P, et al. Genome Res. 2006 Feb;16(2):271-81. doi: 10.1101/gr.4452906. Epub 2005 Dec 19. Genome Res. 2006. PMID: 16365382 Free PMC article.

2

Global identification of human transcribed sequences with genome tiling arrays.

Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M. Bertone P, et al. Science. 2004 Dec 24;306(5705):2242-6. doi: 10.1126/science.1103388. Epub 2004 Nov 11. Science. 2004. PMID: 15539566

3

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles.

Gilad Y, Rifkin SA, Bertone P, Gerstein M, White KP. Gilad Y, et al. Among authors: bertone p. Genome Res. 2005 May;15(5):674-80. doi: 10.1101/gr.3335705. Genome Res. 2005. PMID: 15867429 Free PMC article.

4

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery.

Bertone P, Gerstein M, Snyder M. Bertone P, et al. Chromosome Res. 2005;13(3):259-74. doi: 10.1007/s10577-005-2165-0. Chromosome Res. 2005. PMID: 15868420 Review.

5

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Royce TE, et al. Among authors: bertone p. Trends Genet. 2005 Aug;21(8):466-75. doi: 10.1016/j.tig.2005.06.007. Trends Genet. 2005. PMID: 15979196 Free PMC article. Review.

6

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.

Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M. Harrison PM, et al. Among authors: bertone p. Genome Res. 2002 Feb;12(2):272-80. doi: 10.1101/gr.207102. Genome Res. 2002. PMID: 11827946 Free PMC article.

7

The transcriptional activity of human Chromosome 22.

Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM, Hartman S, Harrison PM, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. Rinn JL, et al. Among authors: bertone p. Genes Dev. 2003 Feb 15;17(4):529-40. doi: 10.1101/gad.1055203. Genes Dev. 2003. PMID: 12600945 Free PMC article.

8

ExpressYourself: A modular platform for processing and visualizing microarray data.

Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M. Luscombe NM, et al. Among authors: bertone p. Nucleic Acids Res. 2003 Jul 1;31(13):3477-82. doi: 10.1093/nar/gkg628. Nucleic Acids Res. 2003. PMID: 12824348 Free PMC article.

9

Fast optimal genome tiling with applications to microarray design and homology search.

Berman P, Bertone P, Dasgupta B, Gerstein M, Kao MY, Snyder M. Berman P, et al. Among authors: bertone p. J Comput Biol. 2004;11(4):766-85. doi: 10.1089/cmb.2004.11.766. J Comput Biol. 2004. PMID: 15579244

10

Prospects and challenges in proteomics.

Bertone P, Snyder M. Bertone P, et al. Plant Physiol. 2005 Jun;138(2):560-2. doi: 10.1104/pp.104.900154. Plant Physiol. 2005. PMID: 15955915 Free PMC article. Review. No abstract available.

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