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The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.
Ruepp A, Doudieu ON, van den Oever J, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Skornia C, Wanka S, Rattei T, Pagel P, Riley L, Frishman D, Surmeli D, Tetko IV, Oesterheld M, Stümpflen V, Mewes HW. Ruepp A, et al. Among authors: pagel p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D568-71. doi: 10.1093/nar/gkj074. Nucleic Acids Res. 2006. PMID: 16381934 Free PMC article.
The MIPS mammalian protein-protein interaction database.
Pagel P, Kovac S, Oesterheld M, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Mark P, Stümpflen V, Mewes HW, Ruepp A, Frishman D. Pagel P, et al. Bioinformatics. 2005 Mar;21(6):832-4. doi: 10.1093/bioinformatics/bti115. Epub 2004 Nov 5. Bioinformatics. 2005. PMID: 15531608
MPact: the MIPS protein interaction resource on yeast.
Güldener U, Münsterkötter M, Oesterheld M, Pagel P, Ruepp A, Mewes HW, Stümpflen V. Güldener U, et al. Among authors: pagel p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D436-41. doi: 10.1093/nar/gkj003. Nucleic Acids Res. 2006. PMID: 16381906 Free PMC article.
The Negatome database: a reference set of non-interacting protein pairs.
Smialowski P, Pagel P, Wong P, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Rattei T, Frishman D, Ruepp A. Smialowski P, et al. Among authors: pagel p. Nucleic Acids Res. 2010 Jan;38(Database issue):D540-4. doi: 10.1093/nar/gkp1026. Epub 2009 Nov 17. Nucleic Acids Res. 2010. PMID: 19920129 Free PMC article.
MIPS: analysis and annotation of proteins from whole genomes.
Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, Mannhaupt G, Münsterkötter M, Pagel P, Strack N, Stümpflen V, Warfsmann J, Ruepp A. Mewes HW, et al. Among authors: pagel p. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D41-4. doi: 10.1093/nar/gkh092. Nucleic Acids Res. 2004. PMID: 14681354 Free PMC article.
MIPS: analysis and annotation of proteins from whole genomes in 2005.
Mewes HW, Frishman D, Mayer KF, Münsterkötter M, Noubibou O, Pagel P, Rattei T, Oesterheld M, Ruepp A, Stümpflen V. Mewes HW, et al. Among authors: pagel p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D169-72. doi: 10.1093/nar/gkj148. Nucleic Acids Res. 2006. PMID: 16381839 Free PMC article.
DIMA 2.0--predicted and known domain interactions.
Pagel P, Oesterheld M, Tovstukhina O, Strack N, Stümpflen V, Frishman D. Pagel P, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D651-5. doi: 10.1093/nar/gkm996. Epub 2007 Nov 13. Nucleic Acids Res. 2008. PMID: 17999995 Free PMC article.
505 results