Bafna V - Search Results

1

Identification of post-translational modifications via blind search of mass-spectra.

Tsur D, Tanner S, Zandi E, Bafna V, Pevzner PA. Tsur D, et al. Among authors: bafna v. Proc IEEE Comput Syst Bioinform Conf. 2005:157-66. doi: 10.1109/csb.2005.34. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447973

2

Shotgun protein sequencing by tandem mass spectra assembly.

Bandeira N, Tang H, Bafna V, Pevzner P. Bandeira N, et al. Among authors: bafna v. Anal Chem. 2004 Dec 15;76(24):7221-33. doi: 10.1021/ac0489162. Anal Chem. 2004. PMID: 15595863

3

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra.

Tanner S, Shu H, Frank A, Wang LC, Zandi E, Mumby M, Pevzner PA, Bafna V. Tanner S, et al. Among authors: bafna v. Anal Chem. 2005 Jul 15;77(14):4626-39. doi: 10.1021/ac050102d. Anal Chem. 2005. PMID: 16013882

4

Peptide sequence tags for fast database search in mass-spectrometry.

Frank A, Tanner S, Bafna V, Pevzner P. Frank A, et al. Among authors: bafna v. J Proteome Res. 2005 Jul-Aug;4(4):1287-95. doi: 10.1021/pr050011x. J Proteome Res. 2005. PMID: 16083278

5

Identification of post-translational modifications by blind search of mass spectra.

Tsur D, Tanner S, Zandi E, Bafna V, Pevzner PA. Tsur D, et al. Among authors: bafna v. Nat Biotechnol. 2005 Dec;23(12):1562-7. doi: 10.1038/nbt1168. Epub 2005 Nov 27. Nat Biotechnol. 2005. PMID: 16311586

6

FastR: fast database search tool for non-coding RNA.

Bafna V, Zhang S. Bafna V, et al. Proc IEEE Comput Syst Bioinform Conf. 2004:52-61. doi: 10.1109/csb.2004.1332417. Proc IEEE Comput Syst Bioinform Conf. 2004. PMID: 16447999

7

Improving gene annotation using peptide mass spectrometry.

Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs SP, Bafna V. Tanner S, et al. Among authors: bafna v. Genome Res. 2007 Feb;17(2):231-9. doi: 10.1101/gr.5646507. Epub 2006 Dec 22. Genome Res. 2007. PMID: 17189379 Free PMC article.

8

Unrestrictive identification of post-translational modifications through peptide mass spectrometry.

Tanner S, Pevzner PA, Bafna V. Tanner S, et al. Among authors: bafna v. Nat Protoc. 2006;1(1):67-72. doi: 10.1038/nprot.2006.10. Nat Protoc. 2006. PMID: 17406213

9

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation.

Gupta N, Tanner S, Jaitly N, Adkins JN, Lipton M, Edwards R, Romine M, Osterman A, Bafna V, Smith RD, Pevzner PA. Gupta N, et al. Among authors: bafna v. Genome Res. 2007 Sep;17(9):1362-77. doi: 10.1101/gr.6427907. Epub 2007 Aug 9. Genome Res. 2007. PMID: 17690205 Free PMC article.

10

Accurate annotation of peptide modifications through unrestrictive database search.

Tanner S, Payne SH, Dasari S, Shen Z, Wilmarth PA, David LL, Loomis WF, Briggs SP, Bafna V. Tanner S, et al. Among authors: bafna v. J Proteome Res. 2008 Jan;7(1):170-81. doi: 10.1021/pr070444v. Epub 2007 Nov 23. J Proteome Res. 2008. PMID: 18034453

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