Aach JD - Search Results

1

Long-range polony haplotyping of individual human chromosome molecules.

Zhang K, Zhu J, Shendure J, Porreca GJ, Aach JD, Mitra RD, Church GM. Zhang K, et al. Among authors: aach jd. Nat Genet. 2006 Mar;38(3):382-7. doi: 10.1038/ng1741. Epub 2006 Feb 19. Nat Genet. 2006. PMID: 16493423

2

Multiplex single-molecule interaction profiling of DNA-barcoded proteins.

Gu L, Li C, Aach J, Hill DE, Vidal M, Church GM. Gu L, et al. Nature. 2014 Nov 27;515(7528):554-7. doi: 10.1038/nature13761. Epub 2014 Sep 21. Nature. 2014. PMID: 25252978 Free PMC article.

3

Mathematical models of diffusion-constrained polymerase chain reactions: basis of high-throughput nucleic acid assays and simple self-organizing systems.

Aach J, Church GM. Aach J, et al. J Theor Biol. 2004 May 7;228(1):31-46. doi: 10.1016/j.jtbi.2003.12.003. J Theor Biol. 2004. PMID: 15064081

4

Multiplex padlock targeted sequencing reveals human hypermutable CpG variations.

Li JB, Gao Y, Aach J, Zhang K, Kryukov GV, Xie B, Ahlford A, Yoon JK, Rosenbaum AM, Zaranek AW, LeProust E, Sunyaev SR, Church GM. Li JB, et al. Genome Res. 2009 Sep;19(9):1606-15. doi: 10.1101/gr.092213.109. Epub 2009 Jun 12. Genome Res. 2009. PMID: 19525355 Free PMC article.

5

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human.

Zhang K, Li JB, Gao Y, Egli D, Xie B, Deng J, Li Z, Lee JH, Aach J, Leproust EM, Eggan K, Church GM. Zhang K, et al. Nat Methods. 2009 Aug;6(8):613-8. doi: 10.1038/nmeth.1357. Epub 2009 Jul 20. Nat Methods. 2009. PMID: 19620972 Free PMC article.

6

Barcoding cells using cell-surface programmable DNA-binding domains.

Mali P, Aach J, Lee JH, Levner D, Nip L, Church GM. Mali P, et al. Nat Methods. 2013 May;10(5):403-6. doi: 10.1038/nmeth.2407. Epub 2013 Mar 17. Nat Methods. 2013. PMID: 23503053 Free PMC article.

7

Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues.

Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Ferrante TC, Terry R, Turczyk BM, Yang JL, Lee HS, Aach J, Zhang K, Church GM. Lee JH, et al. Nat Protoc. 2015 Mar;10(3):442-58. doi: 10.1038/nprot.2014.191. Epub 2015 Feb 12. Nat Protoc. 2015. PMID: 25675209 Free PMC article.

8

Chromosome-scale, haplotype-resolved assembly of human genomes.

Garg S, Fungtammasan A, Carroll A, Chou M, Schmitt A, Zhou X, Mac S, Peluso P, Hatas E, Ghurye J, Maguire J, Mahmoud M, Cheng H, Heller D, Zook JM, Moemke T, Marschall T, Sedlazeck FJ, Aach J, Chin CS, Church GM, Li H. Garg S, et al. Nat Biotechnol. 2021 Mar;39(3):309-312. doi: 10.1038/s41587-020-0711-0. Epub 2020 Dec 7. Nat Biotechnol. 2021. PMID: 33288905 Free PMC article.

9

Computational comparison of two draft sequences of the human genome.

Aach J, Bulyk ML, Church GM, Comander J, Derti A, Shendure J. Aach J, et al. Nature. 2001 Feb 15;409(6822):856-9. doi: 10.1038/35057055. Nature. 2001. PMID: 11237010

10

Aligning gene expression time series with time warping algorithms.

Aach J, Church GM. Aach J, et al. Bioinformatics. 2001 Jun;17(6):495-508. doi: 10.1093/bioinformatics/17.6.495. Bioinformatics. 2001. PMID: 11395426

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