Gray JJ - Search Results

1

High-resolution protein-protein docking.

Gray JJ. Gray JJ. Curr Opin Struct Biol. 2006 Apr;16(2):183-93. doi: 10.1016/j.sbi.2006.03.003. Epub 2006 Mar 20. Curr Opin Struct Biol. 2006. PMID: 16546374 Review.

2

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations.

Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D. Gray JJ, et al. J Mol Biol. 2003 Aug 1;331(1):281-99. doi: 10.1016/s0022-2836(03)00670-3. J Mol Biol. 2003. PMID: 12875852

3

The interaction of proteins with solid surfaces.

Gray JJ. Gray JJ. Curr Opin Struct Biol. 2004 Feb;14(1):110-5. doi: 10.1016/j.sbi.2003.12.001. Curr Opin Struct Biol. 2004. PMID: 15102457 Review.

4

CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock.

Daily MD, Masica D, Sivasubramanian A, Somarouthu S, Gray JJ. Daily MD, et al. Among authors: gray jj. Proteins. 2005 Aug 1;60(2):181-6. doi: 10.1002/prot.20555. Proteins. 2005. PMID: 15981262

5

Structural model of the mAb 806-EGFR complex using computational docking followed by computational and experimental mutagenesis.

Sivasubramanian A, Chao G, Pressler HM, Wittrup KD, Gray JJ. Sivasubramanian A, et al. Among authors: gray jj. Structure. 2006 Mar;14(3):401-14. doi: 10.1016/j.str.2005.11.022. Structure. 2006. PMID: 16531225 Free article.

6

Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12.

Chaudhury S, Sircar A, Sivasubramanian A, Berrondo M, Gray JJ. Chaudhury S, et al. Among authors: gray jj. Proteins. 2007 Dec 1;69(4):793-800. doi: 10.1002/prot.21731. Proteins. 2007. PMID: 17894347

7

Structure prediction of protein-solid surface interactions reveals a molecular recognition motif of statherin for hydroxyapatite.

Makrodimitris K, Masica DL, Kim ET, Gray JJ. Makrodimitris K, et al. Among authors: gray jj. J Am Chem Soc. 2007 Nov 7;129(44):13713-22. doi: 10.1021/ja074602v. Epub 2007 Oct 12. J Am Chem Soc. 2007. PMID: 17929924

8

Structure prediction of domain insertion proteins from structures of individual domains.

Berrondo M, Ostermeier M, Gray JJ. Berrondo M, et al. Among authors: gray jj. Structure. 2008 Apr;16(4):513-27. doi: 10.1016/j.str.2008.01.012. Structure. 2008. PMID: 18400174 Free PMC article.

9

The RosettaDock server for local protein-protein docking.

Lyskov S, Gray JJ. Lyskov S, et al. Among authors: gray jj. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W233-8. doi: 10.1093/nar/gkn216. Epub 2008 Apr 28. Nucleic Acids Res. 2008. PMID: 18442991 Free PMC article.

10

Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles.

Chaudhury S, Gray JJ. Chaudhury S, et al. Among authors: gray jj. J Mol Biol. 2008 Sep 12;381(4):1068-87. doi: 10.1016/j.jmb.2008.05.042. Epub 2008 May 24. J Mol Biol. 2008. PMID: 18640688 Free PMC article.

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