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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF. Krogan NJ, et al. Among authors: parkinson j. Nature. 2006 Mar 30;440(7084):637-43. doi: 10.1038/nature04670. Epub 2006 Mar 22. Nature. 2006. PMID: 16554755
PartiGeneDB--collating partial genomes.
Peregrín-Alvarez JM, Yam A, Sivakumar G, Parkinson J. Peregrín-Alvarez JM, et al. Among authors: parkinson j. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D303-7. doi: 10.1093/nar/gki109. Nucleic Acids Res. 2005. PMID: 15608203 Free PMC article.
Bacteriome.org--an integrated protein interaction database for E. coli.
Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Su C, et al. Among authors: parkinson j. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. doi: 10.1093/nar/gkm807. Epub 2007 Oct 16. Nucleic Acids Res. 2008. PMID: 17942431 Free PMC article.
The global landscape of sequence diversity.
Peregrín-Alvarez JM, Parkinson J. Peregrín-Alvarez JM, et al. Among authors: parkinson j. Genome Biol. 2007;8(11):R238. doi: 10.1186/gb-2007-8-11-r238. Genome Biol. 2007. PMID: 17996061 Free PMC article.
Phylogenomic analysis of EST datasets.
Peregrín-Alvarez JM, Parkinson J. Peregrín-Alvarez JM, et al. Among authors: parkinson j. Methods Mol Biol. 2009;533:257-76. doi: 10.1007/978-1-60327-136-3_12. Methods Mol Biol. 2009. PMID: 19277568
The origins of apicomplexan sequence innovation.
Wasmuth J, Daub J, Peregrín-Alvarez JM, Finney CA, Parkinson J. Wasmuth J, et al. Among authors: parkinson j. Genome Res. 2009 Jul;19(7):1202-13. doi: 10.1101/gr.083386.108. Epub 2009 Apr 10. Genome Res. 2009. PMID: 19363216 Free PMC article.
The conservation and evolutionary modularity of metabolism.
Peregrín-Alvarez JM, Sanford C, Parkinson J. Peregrín-Alvarez JM, et al. Among authors: parkinson j. Genome Biol. 2009;10(6):R63. doi: 10.1186/gb-2009-10-6-r63. Epub 2009 Jun 12. Genome Biol. 2009. PMID: 19523219 Free PMC article.
The Modular Organization of Protein Interactions in Escherichia coli.
Peregrín-Alvarez JM, Xiong X, Su C, Parkinson J. Peregrín-Alvarez JM, et al. Among authors: parkinson j. PLoS Comput Biol. 2009 Oct;5(10):e1000523. doi: 10.1371/journal.pcbi.1000523. Epub 2009 Oct 2. PLoS Comput Biol. 2009. PMID: 19798435 Free PMC article.
932 results