Fokkens L - Search Results

1

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.

Franke L, van Bakel H, Fokkens L, de Jong ED, Egmont-Petersen M, Wijmenga C. Franke L, et al. Among authors: fokkens l. Am J Hum Genet. 2006 Jun;78(6):1011-25. doi: 10.1086/504300. Epub 2006 Apr 25. Am J Hum Genet. 2006. PMID: 16685651 Free PMC article.

2

Cohesive versus flexible evolution of functional modules in eukaryotes.

Fokkens L, Snel B. Fokkens L, et al. PLoS Comput Biol. 2009 Jan;5(1):e1000276. doi: 10.1371/journal.pcbi.1000276. Epub 2009 Jan 30. PLoS Comput Biol. 2009. PMID: 19180181 Free PMC article.

3

Functional overlap and regulatory links shape genetic interactions between signaling pathways.

van Wageningen S, Kemmeren P, Lijnzaad P, Margaritis T, Benschop JJ, de Castro IJ, van Leenen D, Groot Koerkamp MJ, Ko CW, Miles AJ, Brabers N, Brok MO, Lenstra TL, Fiedler D, Fokkens L, Aldecoa R, Apweiler E, Taliadouros V, Sameith K, van de Pasch LA, van Hooff SR, Bakker LV, Krogan NJ, Snel B, Holstege FC. van Wageningen S, et al. Among authors: fokkens l. Cell. 2010 Dec 10;143(6):991-1004. doi: 10.1016/j.cell.2010.11.021. Cell. 2010. PMID: 21145464 Free PMC article.

4

Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age.

Fokkens L, Hogeweg P, Snel B. Fokkens L, et al. BMC Evol Biol. 2012 Jun 25;12:99. doi: 10.1186/1471-2148-12-99. BMC Evol Biol. 2012. PMID: 22732003 Free PMC article.

5

Transcription Factors Encoded on Core and Accessory Chromosomes of Fusarium oxysporum Induce Expression of Effector Genes.

van der Does HC, Fokkens L, Yang A, Schmidt SM, Langereis L, Lukasiewicz JM, Hughes TR, Rep M. van der Does HC, et al. Among authors: fokkens l. PLoS Genet. 2016 Nov 17;12(11):e1006401. doi: 10.1371/journal.pgen.1006401. eCollection 2016 Nov. PLoS Genet. 2016. PMID: 27855160 Free PMC article.

6

Enrichment of homologs in insignificant BLAST hits by co-complex network alignment.

Fokkens L, Botelho SM, Boekhorst J, Snel B. Fokkens L, et al. BMC Bioinformatics. 2010 Feb 12;11:86. doi: 10.1186/1471-2105-11-86. BMC Bioinformatics. 2010. PMID: 20152020 Free PMC article.

7

Exchange of core chromosomes and horizontal transfer of lineage-specific chromosomes in Fusarium oxysporum.

Vlaardingerbroek I, Beerens B, Rose L, Fokkens L, Cornelissen BJ, Rep M. Vlaardingerbroek I, et al. Among authors: fokkens l. Environ Microbiol. 2016 Nov;18(11):3702-3713. doi: 10.1111/1462-2920.13281. Epub 2016 Apr 21. Environ Microbiol. 2016. PMID: 26941045

8

Effector profiles distinguish formae speciales of Fusarium oxysporum.

van Dam P, Fokkens L, Schmidt SM, Linmans JH, Kistler HC, Ma LJ, Rep M. van Dam P, et al. Among authors: fokkens l. Environ Microbiol. 2016 Nov;18(11):4087-4102. doi: 10.1111/1462-2920.13445. Epub 2016 Jul 29. Environ Microbiol. 2016. PMID: 27387256

9

Related mobile pathogenicity chromosomes in Fusarium oxysporum determine host range on cucurbits.

Li J, Fokkens L, van Dam P, Rep M. Li J, et al. Among authors: fokkens l. Mol Plant Pathol. 2020 Jun;21(6):761-776. doi: 10.1111/mpp.12927. Epub 2020 Apr 4. Mol Plant Pathol. 2020. PMID: 32246740 Free PMC article.

10

Partial pathogenicity chromosomes in Fusarium oxysporum are sufficient to cause disease and can be horizontally transferred.

Li J, Fokkens L, Conneely LJ, Rep M. Li J, et al. Among authors: fokkens l. Environ Microbiol. 2020 Dec;22(12):4985-5004. doi: 10.1111/1462-2920.15095. Epub 2020 Jun 14. Environ Microbiol. 2020. PMID: 32452643 Free PMC article.

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