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Page 1
Parametric alignment of Drosophila genomes.
Dewey CN, Huggins PM, Woods K, Sturmfels B, Pachter L. Dewey CN, et al. Among authors: huggins pm. PLoS Comput Biol. 2006 Jun 23;2(6):e73. doi: 10.1371/journal.pcbi.0020073. Epub 2006 Jun 23. PLoS Comput Biol. 2006. PMID: 16789815 Free PMC article.
Toward the human genotope.
Huggins P, Pachter L, Sturmfels B. Huggins P, et al. Bull Math Biol. 2007 Nov;69(8):2723-35. doi: 10.1007/s11538-007-9244-7. Epub 2007 Sep 15. Bull Math Biol. 2007. PMID: 17874271
On the optimality of the neighbor-joining algorithm.
Eickmeyer K, Huggins P, Pachter L, Yoshida R. Eickmeyer K, et al. Algorithms Mol Biol. 2008 Apr 30;3:5. doi: 10.1186/1748-7188-3-5. Algorithms Mol Biol. 2008. PMID: 18447942 Free PMC article.
Bayes estimators for phylogenetic reconstruction.
Huggins PM, Li W, Haws D, Friedrich T, Liu J, Yoshida R. Huggins PM, et al. Syst Biol. 2011 Jul;60(4):528-40. doi: 10.1093/sysbio/syr021. Epub 2011 Apr 6. Syst Biol. 2011. PMID: 21471560 Free PMC article.
Statistical phylogenetic tree analysis using differences of means.
Arnaoudova E, Haws DC, Huggins P, Jaromczyk JW, Moore N, Schardl CL, Yoshida R. Arnaoudova E, et al. Front Neurosci. 2010 Aug 3;4:47. doi: 10.3389/fnins.2010.00047. eCollection 2010. Front Neurosci. 2010. PMID: 20802801 Free PMC article.
kdetrees: Non-parametric estimation of phylogenetic tree distributions.
Weyenberg G, Huggins PM, Schardl CL, Howe DK, Yoshida R. Weyenberg G, et al. Among authors: huggins pm. Bioinformatics. 2014 Aug 15;30(16):2280-7. doi: 10.1093/bioinformatics/btu258. Epub 2014 Apr 24. Bioinformatics. 2014. PMID: 24764459 Free PMC article.
Cross species analysis of microarray expression data.
Lu Y, Huggins P, Bar-Joseph Z. Lu Y, et al. Bioinformatics. 2009 Jun 15;25(12):1476-83. doi: 10.1093/bioinformatics/btp247. Epub 2009 Apr 8. Bioinformatics. 2009. PMID: 19357096 Free PMC article. Review.
DECOD: fast and accurate discriminative DNA motif finding.
Huggins P, Zhong S, Shiff I, Beckerman R, Laptenko O, Prives C, Schulz MH, Simon I, Bar-Joseph Z. Huggins P, et al. Bioinformatics. 2011 Sep 1;27(17):2361-7. doi: 10.1093/bioinformatics/btr412. Epub 2011 Jul 12. Bioinformatics. 2011. PMID: 21752801 Free PMC article.
12 results