Castrignanò T - Search Results

1

ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.

Castrignanò T, Rizzi R, Talamo IG, De Meo PD, Anselmo A, Bonizzoni P, Pesole G. Castrignanò T, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W440-3. doi: 10.1093/nar/gkl324. Nucleic Acids Res. 2006. PMID: 16845044 Free PMC article.

2

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.

Castrignanò T, Canali A, Grillo G, Liuni S, Mignone F, Pesole G. Castrignanò T, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W624-7. doi: 10.1093/nar/gkh486. Nucleic Acids Res. 2004. PMID: 15215464 Free PMC article.

3

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G. Castrignanò T, et al. Bioinformatics. 2006 Feb 15;22(4):497-9. doi: 10.1093/bioinformatics/bti754. Epub 2005 Nov 2. Bioinformatics. 2006. PMID: 16267081

4

The PMDB Protein Model Database.

Castrignanò T, De Meo PD, Cozzetto D, Talamo IG, Tramontano A. Castrignanò T, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D306-9. doi: 10.1093/nar/gkj105. Nucleic Acids Res. 2006. PMID: 16381873 Free PMC article.

5

The MEPS server for identifying protein conformational epitopes.

Castrignanò T, De Meo PD, Carrabino D, Orsini M, Floris M, Tramontano A. Castrignanò T, et al. BMC Bioinformatics. 2007 Mar 8;8 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2105-8-S1-S6. BMC Bioinformatics. 2007. PMID: 17430573 Free PMC article.

6

ASPicDB: a database resource for alternative splicing analysis.

Castrignanò T, D'Antonio M, Anselmo A, Carrabino D, D'Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G. Castrignanò T, et al. Bioinformatics. 2008 May 15;24(10):1300-4. doi: 10.1093/bioinformatics/btn113. Epub 2008 Apr 3. Bioinformatics. 2008. PMID: 18388144

7

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.

Horner DS, Pavesi G, Castrignanò T, De Meo PD, Liuni S, Sammeth M, Picardi E, Pesole G. Horner DS, et al. Among authors: castrignano t. Brief Bioinform. 2010 Mar;11(2):181-97. doi: 10.1093/bib/bbp046. Epub 2009 Oct 27. Brief Bioinform. 2010. PMID: 19864250 Review.

8

MitoZoa: a curated mitochondrial genome database of metazoans for comparative genomics studies.

Lupi R, de Meo PD, Picardi E, D'Antonio M, Paoletti D, Castrignanò T, Pesole G, Gissi C. Lupi R, et al. Among authors: castrignano t. Mitochondrion. 2010 Mar;10(2):192-9. doi: 10.1016/j.mito.2010.01.004. Epub 2010 Jan 18. Mitochondrion. 2010. PMID: 20080208

9

Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells.

Chiani F, Iannone C, Negri R, Paoletti D, D'Antonio M, De Meo PD, Castrignanò T. Chiani F, et al. Among authors: castrignano t. Database (Oxford). 2009;2009:bap007. doi: 10.1093/database/bap007. Epub 2009 Jul 28. Database (Oxford). 2009. PMID: 20157480 Free PMC article.

10

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.

Martelli PL, D'Antonio M, Bonizzoni P, Castrignanò T, D'Erchia AM, D'Onorio De Meo P, Fariselli P, Finelli M, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Rossi I, Valletti A, Zauli A, Zambelli F, Casadio R, Pesole G. Martelli PL, et al. Among authors: castrignano t. Nucleic Acids Res. 2011 Jan;39(Database issue):D80-5. doi: 10.1093/nar/gkq1073. Epub 2010 Nov 4. Nucleic Acids Res. 2011. PMID: 21051348 Free PMC article.

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