Caflisch A - Search Results

1

Sequential unfolding of individual helices of bacterioopsin observed in molecular dynamics simulations of extraction from the purple membrane.

Seeber M, Fanelli F, Paci E, Caflisch A. Seeber M, et al. Among authors: caflisch a. Biophys J. 2006 Nov 1;91(9):3276-84. doi: 10.1529/biophysj.106.088591. Epub 2006 Jul 21. Biophys J. 2006. PMID: 16861280 Free PMC article.

2

Computer simulations of protein folding by targeted molecular dynamics.

Ferrara P, Apostolakis J, Caflisch A. Ferrara P, et al. Among authors: caflisch a. Proteins. 2000 May 15;39(3):252-60. doi: 10.1002/(sici)1097-0134(20000515)39:3<252::aid-prot80>3.0.co;2-3. Proteins. 2000. PMID: 10737947

3

Folding simulations of a three-stranded antiparallel beta -sheet peptide.

Ferrara P, Caflisch A. Ferrara P, et al. Among authors: caflisch a. Proc Natl Acad Sci U S A. 2000 Sep 26;97(20):10780-5. doi: 10.1073/pnas.190324897. Proc Natl Acad Sci U S A. 2000. PMID: 10984515 Free PMC article.

4

Role of native topology investigated by multiple unfolding simulations of four SH3 domains.

Gsponer J, Caflisch A. Gsponer J, et al. Among authors: caflisch a. J Mol Biol. 2001 May 25;309(1):285-98. doi: 10.1006/jmbi.2001.4552. J Mol Biol. 2001. PMID: 11491296

5

Evaluation of a fast implicit solvent model for molecular dynamics simulations.

Ferrara P, Apostolakis J, Caflisch A. Ferrara P, et al. Among authors: caflisch a. Proteins. 2002 Jan 1;46(1):24-33. doi: 10.1002/prot.10001. Proteins. 2002. PMID: 11746700

6

Flexibility of the murine prion protein and its Asp178Asn mutant investigated by molecular dynamics simulations.

Gsponer J, Ferrara P, Caflisch A. Gsponer J, et al. Among authors: caflisch a. J Mol Graph Model. 2001;20(2):169-82. doi: 10.1016/s1093-3263(01)00117-6. J Mol Graph Model. 2001. PMID: 11775003

7

Forces and energetics of hapten-antibody dissociation: a biased molecular dynamics simulation study.

Paci E, Caflisch A, Plückthun A, Karplus M. Paci E, et al. Among authors: caflisch a. J Mol Biol. 2001 Nov 30;314(3):589-605. doi: 10.1006/jmbi.2001.5103. J Mol Biol. 2001. PMID: 11846569

8

Weak temperature dependence of the free energy surface and folding pathways of structured peptides.

Cavalli A, Ferrara P, Caflisch A. Cavalli A, et al. Among authors: caflisch a. Proteins. 2002 May 15;47(3):305-14. doi: 10.1002/prot.10041. Proteins. 2002. PMID: 11948784

9

Molecular dynamics simulations of protein folding from the transition state.

Gsponer J, Caflisch A. Gsponer J, et al. Among authors: caflisch a. Proc Natl Acad Sci U S A. 2002 May 14;99(10):6719-24. doi: 10.1073/pnas.092686399. Epub 2002 Apr 30. Proc Natl Acad Sci U S A. 2002. PMID: 11983864 Free PMC article.

10

Analysis of the distributed computing approach applied to the folding of a small beta peptide.

Paci E, Cavalli A, Vendruscolo M, Caflisch A. Paci E, et al. Among authors: caflisch a. Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8217-22. doi: 10.1073/pnas.1331838100. Epub 2003 Jun 18. Proc Natl Acad Sci U S A. 2003. PMID: 12815104 Free PMC article.

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