Seeber M - Search Results

1

Sequential unfolding of individual helices of bacterioopsin observed in molecular dynamics simulations of extraction from the purple membrane.

Seeber M, Fanelli F, Paci E, Caflisch A. Seeber M, et al. Biophys J. 2006 Nov 1;91(9):3276-84. doi: 10.1529/biophysj.106.088591. Epub 2006 Jul 21. Biophys J. 2006. PMID: 16861280 Free PMC article.

2

Molecular dynamics simulations of the ligand-induced chemical information transfer in the 5-HT(1A) receptor.

Seeber M, De Benedetti PG, Fanelli F. Seeber M, et al. J Chem Inf Comput Sci. 2003 Sep-Oct;43(5):1520-31. doi: 10.1021/ci034069c. J Chem Inf Comput Sci. 2003. PMID: 14502486

3

Synthesis, screening, and molecular modeling of new potent and selective antagonists at the alpha 1d adrenergic receptor.

Leonardi A, Barlocco D, Montesano F, Cignarella G, Motta G, Testa R, Poggesi E, Seeber M, De Benedetti PG, Fanelli F. Leonardi A, et al. Among authors: seeber m. J Med Chem. 2004 Apr 8;47(8):1900-18. doi: 10.1021/jm030944+. J Med Chem. 2004. PMID: 15055991

4

Replica exchange molecular dynamics simulations of amyloid peptide aggregation.

Cecchini M, Rao F, Seeber M, Caflisch A. Cecchini M, et al. Among authors: seeber m. J Chem Phys. 2004 Dec 1;121(21):10748-56. doi: 10.1063/1.1809588. J Chem Phys. 2004. PMID: 15549960

5

Probing fragment complementation by rigid-body docking: in silico reconstitution of calbindin D9k.

Dell'Orco D, Seeber M, De Benedetti PG, Fanelli F. Dell'Orco D, et al. Among authors: seeber m. J Chem Inf Model. 2005 Sep-Oct;45(5):1429-38. doi: 10.1021/ci0501995. J Chem Inf Model. 2005. PMID: 16180920

6

Quaternary structure predictions of transmembrane proteins starting from the monomer: a docking-based approach.

Casciari D, Seeber M, Fanelli F. Casciari D, et al. Among authors: seeber m. BMC Bioinformatics. 2006 Jul 12;7:340. doi: 10.1186/1471-2105-7-340. BMC Bioinformatics. 2006. PMID: 16836758 Free PMC article.

7

Monomeric dark rhodopsin holds the molecular determinants for transducin recognition: insights from computational analysis.

Dell'Orco D, Seeber M, Fanelli F. Dell'Orco D, et al. Among authors: seeber m. FEBS Lett. 2007 Mar 6;581(5):944-8. doi: 10.1016/j.febslet.2007.01.074. Epub 2007 Feb 6. FEBS Lett. 2007. PMID: 17300784 Free article.

8

Wordom: a program for efficient analysis of molecular dynamics simulations.

Seeber M, Cecchini M, Rao F, Settanni G, Caflisch A. Seeber M, et al. Bioinformatics. 2007 Oct 1;23(19):2625-7. doi: 10.1093/bioinformatics/btm378. Epub 2007 Aug 23. Bioinformatics. 2007. PMID: 17717034 Free article.

9

Mechanisms of inter- and intramolecular communication in GPCRs and G proteins.

Raimondi F, Seeber M, Benedetti PG, Fanelli F. Raimondi F, et al. Among authors: seeber m. J Am Chem Soc. 2008 Apr 2;130(13):4310-25. doi: 10.1021/ja077268b. Epub 2008 Mar 12. J Am Chem Soc. 2008. PMID: 18335928

10

Bulky side chains and non-native salt bridges slow down the folding of a cross-linked helical peptide: a combined molecular dynamics and time-resolved infrared spectroscopy study.

Paoli B, Seeber M, Backus EH, Ihalainen JA, Hamm P, Caflisch A. Paoli B, et al. Among authors: seeber m. J Phys Chem B. 2009 Apr 2;113(13):4435-42. doi: 10.1021/jp810431s. J Phys Chem B. 2009. PMID: 19256526

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