Bulyk ML - Search Results

1

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.

Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Biotechnol. 2006 Nov;24(11):1429-35. doi: 10.1038/nbt1246. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998473 Free PMC article.

2

Quantifying DNA-protein interactions by double-stranded DNA arrays.

Bulyk ML, Gentalen E, Lockhart DJ, Church GM. Bulyk ML, et al. Nat Biotechnol. 1999 Jun;17(6):573-7. doi: 10.1038/9878. Nat Biotechnol. 1999. PMID: 10385322

3

Computational comparison of two draft sequences of the human genome.

Aach J, Bulyk ML, Church GM, Comander J, Derti A, Shendure J. Aach J, et al. Among authors: bulyk ml. Nature. 2001 Feb 15;409(6822):856-9. doi: 10.1038/35057055. Nature. 2001. PMID: 11237010

4

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays.

Bulyk ML, Huang X, Choo Y, Church GM. Bulyk ML, et al. Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7158-63. doi: 10.1073/pnas.111163698. Epub 2001 Jun 12. Proc Natl Acad Sci U S A. 2001. PMID: 11404456 Free PMC article.

5

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.

Bulyk ML, Johnson PL, Church GM. Bulyk ML, et al. Nucleic Acids Res. 2002 Mar 1;30(5):1255-61. doi: 10.1093/nar/30.5.1255. Nucleic Acids Res. 2002. PMID: 11861919 Free PMC article.

6

A statistical model for investigating binding probabilities of DNA nucleotide sequences using microarrays.

Lee ML, Bulyk ML, Whitmore GA, Church GM. Lee ML, et al. Among authors: bulyk ml. Biometrics. 2002 Dec;58(4):981-8. doi: 10.1111/j.0006-341x.2002.00981.x. Biometrics. 2002. PMID: 12495153

7

Computational prediction of transcription-factor binding site locations.

Bulyk ML. Bulyk ML. Genome Biol. 2003;5(1):201. doi: 10.1186/gb-2003-5-1-201. Epub 2003 Dec 23. Genome Biol. 2003. PMID: 14709165 Free PMC article. Review.

8

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, Bulyk ML. Mukherjee S, et al. Among authors: bulyk ml. Nat Genet. 2004 Dec;36(12):1331-9. doi: 10.1038/ng1473. Epub 2004 Nov 14. Nat Genet. 2004. PMID: 15543148 Free PMC article.

9

Modulefinder: a tool for computational discovery of cis regulatory modules.

Philippakis AA, He FS, Bulyk ML. Philippakis AA, et al. Among authors: bulyk ml. Pac Symp Biocomput. 2005:519-30. Pac Symp Biocomput. 2005. PMID: 15759656 Free PMC article.

10

Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.

Huber BR, Bulyk ML. Huber BR, et al. Among authors: bulyk ml. BMC Bioinformatics. 2006 Apr 27;7:229. doi: 10.1186/1471-2105-7-229. BMC Bioinformatics. 2006. PMID: 16643658 Free PMC article.

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