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A community-sourced glossary of open scholarship terms.
Parsons S, Azevedo F, Elsherif MM, Guay S, Shahim ON, Govaart GH, Norris E, O'Mahony A, Parker AJ, Todorovic A, Pennington CR, Garcia-Pelegrin E, Lazić A, Robertson O, Middleton SL, Valentini B, McCuaig J, Baker BJ, Collins E, Fillon AA, Lonsdorf TB, Lim MC, Vanek N, Kovacs M, Roettger TB, Rishi S, Miranda JF, Jaquiery M, Stewart SLK, Agostini V, Stewart AJ, Izydorczak K, Ashcroft-Jones S, Hartmann H, Ingham M, Yamada Y, Vasilev MR, Dechterenko F, Albayrak-Aydemir N, Yang YF, LaPlume AA, Wolska JK, Henderson EL, Zaneva M, Farrar BG, Mounce R, Kalandadze T, Li W, Xiao Q, Ross RM, Yeung SK, Liu M, Vandegrift ML, Kekecs Z, Topor MK, Baum MA, Williams EA, Assaneea AA, Bret A, Cashin AG, Ballou N, Dumbalska T, Kern BMJ, Melia CR, Arendt B, Vineyard GH, Pickering JS, Evans TR, Laverty C, Woodward EA, Moreau D, Roche DG, Rinke EM, Reid G, Garcia-Garzon E, Verheyen S, Kocalar HE, Blake AR, Cockcroft JP, Micheli L, Bret BB, Flack ZM, Szaszi B, Weinmann M, Lecuona O, Schmidt B, Ngiam WX, Mendes AB, Francis S, Gall BJ, Paul M, Keating CT, Grose-Hodge M, Bartlett JE, Iley BJ, Spitzer L, Pownall M, Graham CJ, Wingen T, Terry J, Oliveira CMF, Millager RA, Fox KJ, AlDoh A, Hart A, van den Akker … See abstract for full author list ➔ Parsons S, et al. Nat Hum Behav. 2022 Mar;6(3):312-318. doi: 10.1038/s41562-021-01269-4. Nat Hum Behav. 2022. PMID: 35190714 Free article. No abstract available.
Large-scale mutational analysis identifies UNC93B1 variants that drive TLR-mediated autoimmunity in mice and humans.
Rael VE, Yano JA, Huizar JP, Slayden LC, Weiss MA, Turcotte EA, Terry JM, Zuo W, Thiffault I, Pastinen T, Farrow EG, Jenkins JL, Becker ML, Wong SC, Stevens AM, Otten C, Allenspach EJ, Bonner DE, Bernstein JA, Wheeler MT, Saxton RA; Undiagnosed Diseases Network; Liu B, Majer O, Barton GM. Rael VE, et al. Among authors: terry jm. J Exp Med. 2024 Aug 5;221(8):e20232005. doi: 10.1084/jem.20232005. Epub 2024 May 23. J Exp Med. 2024. PMID: 38780621 Free PMC article.
Progenitor identification and SARS-CoV-2 infection in human distal lung organoids.
Salahudeen AA, Choi SS, Rustagi A, Zhu J, van Unen V, de la O SM, Flynn RA, Margalef-Català M, Santos AJM, Ju J, Batish A, Usui T, Zheng GXY, Edwards CE, Wagar LE, Luca V, Anchang B, Nagendran M, Nguyen K, Hart DJ, Terry JM, Belgrader P, Ziraldo SB, Mikkelsen TS, Harbury PB, Glenn JS, Garcia KC, Davis MM, Baric RS, Sabatti C, Amieva MR, Blish CA, Desai TJ, Kuo CJ. Salahudeen AA, et al. Among authors: terry jm. Nature. 2020 Dec;588(7839):670-675. doi: 10.1038/s41586-020-3014-1. Epub 2020 Nov 25. Nature. 2020. PMID: 33238290 Free PMC article.
Progenitor identification and SARS-CoV-2 infection in long-term human distal lung organoid cultures.
Salahudeen AA, Choi SS, Rustagi A, Zhu J, de la O SM, Flynn RA, Margalef-Català M, Santos AJM, Ju J, Batish A, van Unen V, Usui T, Zheng GXY, Edwards CE, Wagar LE, Luca V, Anchang B, Nagendran M, Nguyen K, Hart DJ, Terry JM, Belgrader P, Ziraldo SB, Mikkelsen TS, Harbury PB, Glenn JS, Garcia KC, Davis MM, Baric RS, Sabatti C, Amieva MR, Blish CA, Desai TJ, Kuo CJ. Salahudeen AA, et al. Among authors: terry jm. bioRxiv [Preprint]. 2020 Jul 27:2020.07.27.212076. doi: 10.1101/2020.07.27.212076. bioRxiv. 2020. Update in: Nature. 2020 Dec;588(7839):670-675. doi: 10.1038/s41586-020-3014-1 PMID: 32743583 Free PMC article. Updated. Preprint.
Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing.
Replogle JM, Norman TM, Xu A, Hussmann JA, Chen J, Cogan JZ, Meer EJ, Terry JM, Riordan DP, Srinivas N, Fiddes IT, Arthur JG, Alvarado LJ, Pfeiffer KA, Mikkelsen TS, Weissman JS, Adamson B. Replogle JM, et al. Among authors: terry jm. Nat Biotechnol. 2020 Aug;38(8):954-961. doi: 10.1038/s41587-020-0470-y. Epub 2020 Mar 30. Nat Biotechnol. 2020. PMID: 32231336 Free PMC article.
Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity.
Yan KS, Gevaert O, Zheng GXY, Anchang B, Probert CS, Larkin KA, Davies PS, Cheng ZF, Kaddis JS, Han A, Roelf K, Calderon RI, Cynn E, Hu X, Mandleywala K, Wilhelmy J, Grimes SM, Corney DC, Boutet SC, Terry JM, Belgrader P, Ziraldo SB, Mikkelsen TS, Wang F, von Furstenberg RJ, Smith NR, Chandrakesan P, May R, Chrissy MAS, Jain R, Cartwright CA, Niland JC, Hong YK, Carrington J, Breault DT, Epstein J, Houchen CW, Lynch JP, Martin MG, Plevritis SK, Curtis C, Ji HP, Li L, Henning SJ, Wong MH, Kuo CJ. Yan KS, et al. Among authors: terry jm. Cell Stem Cell. 2017 Jul 6;21(1):78-90.e6. doi: 10.1016/j.stem.2017.06.014. Cell Stem Cell. 2017. PMID: 28686870 Free PMC article.
Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem-cell self-renewal.
Yan KS, Janda CY, Chang J, Zheng GXY, Larkin KA, Luca VC, Chia LA, Mah AT, Han A, Terry JM, Ootani A, Roelf K, Lee M, Yuan J, Li X, Bolen CR, Wilhelmy J, Davies PS, Ueno H, von Furstenberg RJ, Belgrader P, Ziraldo SB, Ordonez H, Henning SJ, Wong MH, Snyder MP, Weissman IL, Hsueh AJ, Mikkelsen TS, Garcia KC, Kuo CJ. Yan KS, et al. Among authors: terry jm. Nature. 2017 May 11;545(7653):238-242. doi: 10.1038/nature22313. Epub 2017 May 3. Nature. 2017. PMID: 28467820 Free PMC article.
Massively parallel digital transcriptional profiling of single cells.
Zheng GX, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, Ziraldo SB, Wheeler TD, McDermott GP, Zhu J, Gregory MT, Shuga J, Montesclaros L, Underwood JG, Masquelier DA, Nishimura SY, Schnall-Levin M, Wyatt PW, Hindson CM, Bharadwaj R, Wong A, Ness KD, Beppu LW, Deeg HJ, McFarland C, Loeb KR, Valente WJ, Ericson NG, Stevens EA, Radich JP, Mikkelsen TS, Hindson BJ, Bielas JH. Zheng GX, et al. Among authors: terry jm. Nat Commun. 2017 Jan 16;8:14049. doi: 10.1038/ncomms14049. Nat Commun. 2017. PMID: 28091601 Free PMC article.
66 results