Gerstein M - Search Results

1

The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.

Yip KY, Yu H, Kim PM, Schultz M, Gerstein M. Yip KY, et al. Among authors: gerstein m. Bioinformatics. 2006 Dec 1;22(23):2968-70. doi: 10.1093/bioinformatics/btl488. Epub 2006 Oct 4. Bioinformatics. 2006. PMID: 17021160

2

Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence.

Gerstein M. Gerstein M. Bioinformatics. 1998;14(8):707-14. doi: 10.1093/bioinformatics/14.8.707. Bioinformatics. 1998. PMID: 9789096

This sometimes results in the initial query sequence (Q) being related to a final match (M) indirectly, through a third, 'intermediate' sequence (Q --> I --> M ). This approach has often been suggested as providing greater sensitivity in sequence comparison; h …

This sometimes results in the initial query sequence (Q) being related to a final match (M) indirectly, through a third, 'intermediat …

3

The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework.

Krebs WG, Gerstein M. Krebs WG, et al. Among authors: gerstein m. Nucleic Acids Res. 2000 Apr 15;28(8):1665-75. doi: 10.1093/nar/28.8.1665. Nucleic Acids Res. 2000. PMID: 10734184 Free PMC article.

4

PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.

Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M. Qian J, et al. Among authors: gerstein m. Nucleic Acids Res. 2001 Apr 15;29(8):1750-64. doi: 10.1093/nar/29.8.1750. Nucleic Acids Res. 2001. PMID: 11292848 Free PMC article.

5

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.

Bertone P, Kluger Y, Lan N, Zheng D, Christendat D, Yee A, Edwards AM, Arrowsmith CH, Montelione GT, Gerstein M. Bertone P, et al. Among authors: gerstein m. Nucleic Acids Res. 2001 Jul 1;29(13):2884-98. doi: 10.1093/nar/29.13.2884. Nucleic Acids Res. 2001. PMID: 11433035 Free PMC article.

6

Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.

Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M. Qian J, et al. Among authors: gerstein m. J Mol Biol. 2001 Dec 14;314(5):1053-66. doi: 10.1006/jmbi.2000.5219. J Mol Biol. 2001. PMID: 11743722

7

Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts.

Greenbaum D, Jansen R, Gerstein M. Greenbaum D, et al. Among authors: gerstein m. Bioinformatics. 2002 Apr;18(4):585-96. doi: 10.1093/bioinformatics/18.4.585. Bioinformatics. 2002. PMID: 12016056

8

Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic.

Krebs WG, Alexandrov V, Wilson CA, Echols N, Yu H, Gerstein M. Krebs WG, et al. Among authors: gerstein m. Proteins. 2002 Sep 1;48(4):682-95. doi: 10.1002/prot.10168. Proteins. 2002. PMID: 12211036

9

ExpressYourself: A modular platform for processing and visualizing microarray data.

Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M. Luscombe NM, et al. Among authors: gerstein m. Nucleic Acids Res. 2003 Jul 1;31(13):3477-82. doi: 10.1093/nar/gkg628. Nucleic Acids Res. 2003. PMID: 12824348 Free PMC article.

10

Identification and correction of spurious spatial correlations in microarray data.

Qian J, Kluger Y, Yu H, Gerstein M. Qian J, et al. Among authors: gerstein m. Biotechniques. 2003 Jul;35(1):42-4, 46, 48. doi: 10.2144/03351bm03. Biotechniques. 2003. PMID: 12866403 Free article. No abstract available.

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