Lygeros J - Search Results

1

DNA replication in the fission yeast: robustness in the face of uncertainty.

Legouras I, Xouri G, Dimopoulos S, Lygeros J, Lygerou Z. Legouras I, et al. Among authors: lygeros j. Yeast. 2006 Oct 15;23(13):951-62. doi: 10.1002/yea.1416. Yeast. 2006. PMID: 17072888 Review.

2

Stochastic hybrid modeling of DNA replication across a complete genome.

Lygeros J, Koutroumpas K, Dimopoulos S, Legouras I, Kouretas P, Heichinger C, Nurse P, Lygerou Z. Lygeros J, et al. Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12295-300. doi: 10.1073/pnas.0805549105. Epub 2008 Aug 19. Proc Natl Acad Sci U S A. 2008. PMID: 18713859 Free PMC article.

3

In silico analysis of DNA re-replication across a complete genome reveals cell-to-cell heterogeneity and genome plasticity.

Rapsomaniki MA, Maxouri S, Nathanailidou P, Garrastacho MR, Giakoumakis NN, Taraviras S, Lygeros J, Lygerou Z. Rapsomaniki MA, et al. Among authors: lygeros j. NAR Genom Bioinform. 2021 Jan 28;3(1):lqaa112. doi: 10.1093/nargab/lqaa112. eCollection 2021 Mar. NAR Genom Bioinform. 2021. PMID: 33554116 Free PMC article.

4

Inference of protein kinetics by stochastic modeling and simulation of fluorescence recovery after photobleaching experiments.

Rapsomaniki MA, Cinquemani E, Giakoumakis NN, Kotsantis P, Lygeros J, Lygerou Z. Rapsomaniki MA, et al. Among authors: lygeros j. Bioinformatics. 2015 Feb 1;31(3):355-62. doi: 10.1093/bioinformatics/btu619. Epub 2014 Sep 30. Bioinformatics. 2015. PMID: 25273108

5

Identification of genetic network dynamics with unate structure.

Porreca R, Cinquemani E, Lygeros J, Ferrari-Trecate G. Porreca R, et al. Among authors: lygeros j. Bioinformatics. 2010 May 1;26(9):1239-45. doi: 10.1093/bioinformatics/btq120. Epub 2010 Mar 19. Bioinformatics. 2010. PMID: 20305266

6

Moment-based inference predicts bimodality in transient gene expression.

Zechner C, Ruess J, Krenn P, Pelet S, Peter M, Lygeros J, Koeppl H. Zechner C, et al. Among authors: lygeros j. Proc Natl Acad Sci U S A. 2012 May 22;109(21):8340-5. doi: 10.1073/pnas.1200161109. Epub 2012 May 7. Proc Natl Acad Sci U S A. 2012. PMID: 22566653 Free PMC article.

7

Iterative experiment design guides the characterization of a light-inducible gene expression circuit.

Ruess J, Parise F, Milias-Argeitis A, Khammash M, Lygeros J. Ruess J, et al. Among authors: lygeros j. Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8148-53. doi: 10.1073/pnas.1423947112. Epub 2015 Jun 17. Proc Natl Acad Sci U S A. 2015. PMID: 26085136 Free PMC article.

8

Designing experiments to understand the variability in biochemical reaction networks.

Ruess J, Milias-Argeitis A, Lygeros J. Ruess J, et al. Among authors: lygeros j. J R Soc Interface. 2013 Aug 28;10(88):20130588. doi: 10.1098/rsif.2013.0588. Print 2013 Nov 6. J R Soc Interface. 2013. PMID: 23985733 Free PMC article.

9

Moment estimation for chemically reacting systems by extended Kalman filtering.

Ruess J, Milias-Argeitis A, Summers S, Lygeros J. Ruess J, et al. Among authors: lygeros j. J Chem Phys. 2011 Oct 28;135(16):165102. doi: 10.1063/1.3654135. J Chem Phys. 2011. PMID: 22047267

10

Fast variance reduction for steady-state simulation and sensitivity analysis of stochastic chemical systems using shadow function estimators.

Milias-Argeitis A, Lygeros J, Khammash M. Milias-Argeitis A, et al. Among authors: lygeros j. J Chem Phys. 2014 Jul 14;141(2):024104. doi: 10.1063/1.4886935. J Chem Phys. 2014. PMID: 25027996

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