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Interpretation of ANOVA models for microarray data using PCA.
de Haan JR, Wehrens R, Bauerschmidt S, Piek E, van Schaik RC, Buydens LM. de Haan JR, et al. Bioinformatics. 2007 Jan 15;23(2):184-90. doi: 10.1093/bioinformatics/btl572. Epub 2006 Nov 14. Bioinformatics. 2007. PMID: 17105717
Osteo-transcriptomics of human mesenchymal stem cells: accelerated gene expression and osteoblast differentiation induced by vitamin D reveals c-MYC as an enhancer of BMP2-induced osteogenesis.
Piek E, Sleumer LS, van Someren EP, Heuver L, de Haan JR, de Grijs I, Gilissen C, Hendriks JM, van Ravestein-van Os RI, Bauerschmidt S, Dechering KJ, van Zoelen EJ. Piek E, et al. Among authors: de haan jr. Bone. 2010 Mar;46(3):613-27. doi: 10.1016/j.bone.2009.10.024. Epub 2009 Oct 24. Bone. 2010. PMID: 19857615
PanTools v3: functional annotation, classification and phylogenomics.
Jonkheer EM, van Workum DM, Sheikhizadeh Anari S, Brankovics B, de Haan JR, Berke L, van der Lee TAJ, de Ridder D, Smit S. Jonkheer EM, et al. Among authors: de haan jr. Bioinformatics. 2022 Sep 15;38(18):4403-4405. doi: 10.1093/bioinformatics/btac506. Bioinformatics. 2022. PMID: 35861394 Free PMC article.
PERGOLA: fast and deterministic linkage mapping of polyploids.
Grandke F, Ranganathan S, van Bers N, de Haan JR, Metzler D. Grandke F, et al. Among authors: de haan jr. BMC Bioinformatics. 2017 Jan 4;18(1):12. doi: 10.1186/s12859-016-1416-8. BMC Bioinformatics. 2017. PMID: 28049428 Free PMC article.
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool.
Jonkheer EM, Brankovics B, Houwers IM, van der Wolf JM, Bonants PJM, Vreeburg RAM, Bollema R, de Haan JR, Berke L, Smit S, de Ridder D, van der Lee TAJ. Jonkheer EM, et al. Among authors: de haan jr. BMC Genomics. 2021 Apr 14;22(1):265. doi: 10.1186/s12864-021-07583-5. BMC Genomics. 2021. PMID: 33849459 Free PMC article.
Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing.
Rommel Fuentes R, Hesselink T, Nieuwenhuis R, Bakker L, Schijlen E, van Dooijeweert W, Diaz Trivino S, de Haan JR, Sanchez Perez G, Zhang X, Fransz P, de Jong H, van Dijk ADJ, de Ridder D, Peters SA. Rommel Fuentes R, et al. Among authors: de haan jr. Plant J. 2020 May;102(3):480-492. doi: 10.1111/tpj.14640. Epub 2020 Jan 22. Plant J. 2020. PMID: 31820490 Free article.
14 results