Standley DM - Search Results

1

Higher order structure contributes to specific differences in redox potential and electron transfer efficiency of root and leaf ferredoxins.

Gou P, Hanke GT, Kimata-Ariga Y, Standley DM, Kubo A, Taniguchi I, Nakamura H, Hase T. Gou P, et al. Among authors: standley dm. Biochemistry. 2006 Dec 5;45(48):14389-96. doi: 10.1021/bi061779d. Biochemistry. 2006. PMID: 17128978

2

Expression of the readthrough transcript CiDRE in alveolar macrophages boosts SARS-CoV-2 susceptibility and promotes COVID-19 severity.

Mitsui Y, Suzuki T, Kuniyoshi K, Inamo J, Yamaguchi K, Komuro M, Watanabe J, Edamoto M, Li S, Kouno T, Oba S, Hosoya T, Masuhiro K, Naito Y, Koyama S, Sakaguchi N, Standley DM, Shin JW, Akira S, Yasuda S, Miyazaki Y, Kochi Y, Kumanogoh A, Okamoto T, Satoh T. Mitsui Y, et al. Among authors: standley dm. Immunity. 2023 Aug 8;56(8):1939-1954.e12. doi: 10.1016/j.immuni.2023.06.013. Epub 2023 Jul 12. Immunity. 2023. PMID: 37442134 Free article.

3

Detecting local structural similarity in proteins by maximizing number of equivalent residues.

Standley DM, Toh H, Nakamura H. Standley DM, et al. Proteins. 2004 Nov 1;57(2):381-91. doi: 10.1002/prot.20211. Proteins. 2004. PMID: 15340925

4

GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures.

Standley DM, Toh H, Nakamura H. Standley DM, et al. BMC Bioinformatics. 2005 Sep 8;6:221. doi: 10.1186/1471-2105-6-221. BMC Bioinformatics. 2005. PMID: 16146579 Free PMC article.

5

Flexible docking of an amyloid-forming peptide from beta(2)-microglobulin.

Standley DM, Yonezawa Y, Goto Y, Nakamura H. Standley DM, et al. FEBS Lett. 2006 Nov 13;580(26):6199-205. doi: 10.1016/j.febslet.2006.10.022. Epub 2006 Oct 18. FEBS Lett. 2006. PMID: 17069810 Free article.

6

ASH structure alignment package: sensitivity and selectivity in domain classification.

Standley DM, Toh H, Nakamura H. Standley DM, et al. BMC Bioinformatics. 2007 Apr 4;8:116. doi: 10.1186/1471-2105-8-116. BMC Bioinformatics. 2007. PMID: 17407606 Free PMC article.

7

Docking of protein molecular surfaces with evolutionary trace analysis.

Kanamori E, Murakami Y, Tsuchiya Y, Standley DM, Nakamura H, Kinoshita K. Kanamori E, et al. Among authors: standley dm. Proteins. 2007 Dec 1;69(4):832-8. doi: 10.1002/prot.21737. Proteins. 2007. PMID: 17803239

8

Functional annotation by sequence-weighted structure alignments: statistical analysis and case studies from the Protein 3000 structural genomics project in Japan.

Standley DM, Toh H, Nakamura H. Standley DM, et al. Proteins. 2008 Sep;72(4):1333-51. doi: 10.1002/prot.22015. Proteins. 2008. PMID: 18384072

9

[From structures to functions: annotation by structural bioinformatics].

Standley DM, Nakamura H. Standley DM, et al. Tanpakushitsu Kakusan Koso. 2008 Apr;53(5):638-44. Tanpakushitsu Kakusan Koso. 2008. PMID: 18409555 Review. Japanese. No abstract available.

10

Protein structure databases with new web services for structural biology and biomedical research.

Standley DM, Kinjo AR, Kinoshita K, Nakamura H. Standley DM, et al. Brief Bioinform. 2008 Jul;9(4):276-85. doi: 10.1093/bib/bbn015. Epub 2008 Apr 22. Brief Bioinform. 2008. PMID: 18430752 Review.

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