Qian J - Search Results

1

Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection tool.

Yu H, Nguyen K, Royce T, Qian J, Nelson K, Snyder M, Gerstein M. Yu H, et al. Among authors: qian j. Nucleic Acids Res. 2007;35(2):e8. doi: 10.1093/nar/gkl871. Epub 2006 Dec 7. Nucleic Acids Res. 2007. PMID: 17158151 Free PMC article.

2

Relationship between gene co-expression and probe localization on microarray slides.

Kluger Y, Yu H, Qian J, Gerstein M. Kluger Y, et al. Among authors: qian j. BMC Genomics. 2003 Dec 10;4(1):49. doi: 10.1186/1471-2164-4-49. BMC Genomics. 2003. PMID: 14667251 Free PMC article.

3

PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.

Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M. Qian J, et al. Nucleic Acids Res. 2001 Apr 15;29(8):1750-64. doi: 10.1093/nar/29.8.1750. Nucleic Acids Res. 2001. PMID: 11292848 Free PMC article.

4

Integration of genomic datasets to predict protein complexes in yeast.

Jansen R, Lan N, Qian J, Gerstein M. Jansen R, et al. Among authors: qian j. J Struct Funct Genomics. 2002;2(2):71-81. doi: 10.1023/a:1020495201615. J Struct Funct Genomics. 2002. PMID: 12836664

5

Identification and correction of spurious spatial correlations in microarray data.

Qian J, Kluger Y, Yu H, Gerstein M. Qian J, et al. Biotechniques. 2003 Jul;35(1):42-4, 46, 48. doi: 10.2144/03351bm03. Biotechniques. 2003. PMID: 12866403 Free article. No abstract available.

6

Genomic analysis of gene expression relationships in transcriptional regulatory networks.

Yu H, Luscombe NM, Qian J, Gerstein M. Yu H, et al. Among authors: qian j. Trends Genet. 2003 Aug;19(8):422-7. doi: 10.1016/S0168-9525(03)00175-6. Trends Genet. 2003. PMID: 12902159

7

Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data.

Cheng C, Yan KK, Hwang W, Qian J, Bhardwaj N, Rozowsky J, Lu ZJ, Niu W, Alves P, Kato M, Snyder M, Gerstein M. Cheng C, et al. Among authors: qian j. PLoS Comput Biol. 2011 Nov;7(11):e1002190. doi: 10.1371/journal.pcbi.1002190. Epub 2011 Nov 17. PLoS Comput Biol. 2011. PMID: 22125477 Free PMC article.

8

Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.

Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M. Qian J, et al. J Mol Biol. 2001 Dec 14;314(5):1053-66. doi: 10.1006/jmbi.2000.5219. J Mol Biol. 2001. PMID: 11743722

9

GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing.

Lin J, Qian J, Greenbaum D, Bertone P, Das R, Echols N, Senes A, Stenger B, Gerstein M. Lin J, et al. Among authors: qian j. Nucleic Acids Res. 2002 Oct 15;30(20):4574-82. doi: 10.1093/nar/gkf555. Nucleic Acids Res. 2002. PMID: 12384605 Free PMC article.

10

Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae.

Horak CE, Luscombe NM, Qian J, Bertone P, Piccirrillo S, Gerstein M, Snyder M. Horak CE, et al. Among authors: qian j. Genes Dev. 2002 Dec 1;16(23):3017-33. doi: 10.1101/gad.1039602. Genes Dev. 2002. PMID: 12464632 Free PMC article.

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