Clementi C - Search Results

1

On the characterization of protein native state ensembles.

Shehu A, Kavraki LE, Clementi C. Shehu A, et al. Among authors: clementi c. Biophys J. 2007 Mar 1;92(5):1503-11. doi: 10.1529/biophysj.106.094409. Epub 2006 Dec 8. Biophys J. 2007. PMID: 17158570 Free PMC article.

2

Two for One: Diffusion Models and Force Fields for Coarse-Grained Molecular Dynamics.

Arts M, Garcia Satorras V, Huang CW, Zügner D, Federici M, Clementi C, Noé F, Pinsler R, van den Berg R. Arts M, et al. Among authors: clementi c. J Chem Theory Comput. 2023 Sep 26;19(18):6151-6159. doi: 10.1021/acs.jctc.3c00702. Epub 2023 Sep 9. J Chem Theory Comput. 2023. PMID: 37688551

3

Quantum dynamics using path integral coarse-graining.

Musil F, Zaporozhets I, Noé F, Clementi C, Kapil V. Musil F, et al. Among authors: clementi c. J Chem Phys. 2022 Nov 14;157(18):181102. doi: 10.1063/5.0120386. J Chem Phys. 2022. PMID: 36379765

4

Optimal combination of theory and experiment for the characterization of the protein folding landscape of S6: how far can a minimalist model go?

Matysiak S, Clementi C. Matysiak S, et al. Among authors: clementi c. J Mol Biol. 2004 Oct 8;343(1):235-48. doi: 10.1016/j.jmb.2004.08.006. J Mol Biol. 2004. PMID: 15381433

5

Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes.

Das P, Matysiak S, Clementi C. Das P, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10141-6. doi: 10.1073/pnas.0409471102. Epub 2005 Jul 8. Proc Natl Acad Sci U S A. 2005. PMID: 16006532 Free PMC article.

6

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction.

Das P, Moll M, Stamati H, Kavraki LE, Clementi C. Das P, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9885-90. doi: 10.1073/pnas.0603553103. Epub 2006 Jun 19. Proc Natl Acad Sci U S A. 2006. PMID: 16785435 Free PMC article.

7

Modeling protein conformational ensembles: from missing loops to equilibrium fluctuations.

Shehu A, Clementi C, Kavraki LE. Shehu A, et al. Among authors: clementi c. Proteins. 2006 Oct 1;65(1):164-79. doi: 10.1002/prot.21060. Proteins. 2006. PMID: 16917941

8

Fast and reliable analysis of molecular motion using proximity relations and dimensionality reduction.

Plaku E, Stamati H, Clementi C, Kavraki LE. Plaku E, et al. Among authors: clementi c. Proteins. 2007 Jun 1;67(4):897-907. doi: 10.1002/prot.21337. Proteins. 2007. PMID: 17380507

9

From coarse-grain to all-atom: toward multiscale analysis of protein landscapes.

Heath AP, Kavraki LE, Clementi C. Heath AP, et al. Among authors: clementi c. Proteins. 2007 Aug 15;68(3):646-61. doi: 10.1002/prot.21371. Proteins. 2007. PMID: 17523187

10

Coarse-grained models of protein folding: toy models or predictive tools?

Clementi C. Clementi C. Curr Opin Struct Biol. 2008 Feb;18(1):10-5. doi: 10.1016/j.sbi.2007.10.005. Epub 2007 Dec 21. Curr Opin Struct Biol. 2008. PMID: 18160277 Review.

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