Simon I - Search Results

1

Ernst J, Vainas O, Harbison CT, Simon I, Bar-Joseph Z. Ernst J, et al. Among authors: simon i. Mol Syst Biol. 2007;3:74. doi: 10.1038/msb4100115. Epub 2007 Jan 16. Mol Syst Biol. 2007. PMID: 17224918 Free PMC article.

2

Serial regulation of transcriptional regulators in the yeast cell cycle.

Simon I, Barnett J, Hannett N, Harbison CT, Rinaldi NJ, Volkert TL, Wyrick JJ, Zeitlinger J, Gifford DK, Jaakkola TS, Young RA. Simon I, et al. Cell. 2001 Sep 21;106(6):697-708. doi: 10.1016/s0092-8674(01)00494-9. Cell. 2001. PMID: 11572776 Free article.

3

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA. Lee TI, et al. Among authors: simon i. Science. 2002 Oct 25;298(5594):799-804. doi: 10.1126/science.1075090. Science. 2002. PMID: 12399584

4

Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

Zeitlinger J, Simon I, Harbison CT, Hannett NM, Volkert TL, Fink GR, Young RA. Zeitlinger J, et al. Among authors: simon i. Cell. 2003 May 2;113(3):395-404. doi: 10.1016/s0092-8674(03)00301-5. Cell. 2003. PMID: 12732146 Free article.

5

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes.

Bar-Joseph Z, Gerber G, Simon I, Gifford DK, Jaakkola TS. Bar-Joseph Z, et al. Among authors: simon i. Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10146-51. doi: 10.1073/pnas.1732547100. Epub 2003 Aug 21. Proc Natl Acad Sci U S A. 2003. PMID: 12934016 Free PMC article.

6

Continuous representations of time-series gene expression data.

Bar-Joseph Z, Gerber GK, Gifford DK, Jaakkola TS, Simon I. Bar-Joseph Z, et al. Among authors: simon i. J Comput Biol. 2003;10(3-4):341-56. doi: 10.1089/10665270360688057. J Comput Biol. 2003. PMID: 12935332

7

Deconvolving cell cycle expression data with complementary information.

Bar-Joseph Z, Farkash S, Gifford DK, Simon I, Rosenfeld R. Bar-Joseph Z, et al. Among authors: simon i. Bioinformatics. 2004 Aug 4;20 Suppl 1:i23-30. doi: 10.1093/bioinformatics/bth915. Bioinformatics. 2004. PMID: 15262777

8

Combined static and dynamic analysis for determining the quality of time-series expression profiles.

Simon I, Siegfried Z, Ernst J, Bar-Joseph Z. Simon I, et al. Nat Biotechnol. 2005 Dec;23(12):1503-8. doi: 10.1038/nbt1164. Nat Biotechnol. 2005. PMID: 16333294

9

Continuous hidden process model for time series expression experiments.

Shi Y, Klustein M, Simon I, Mitchell T, Bar-Joseph Z. Shi Y, et al. Among authors: simon i. Bioinformatics. 2007 Jul 1;23(13):i459-67. doi: 10.1093/bioinformatics/btm218. Bioinformatics. 2007. PMID: 17646331

10

Combined analysis reveals a core set of cycling genes.

Lu Y, Mahony S, Benos PV, Rosenfeld R, Simon I, Breeden LL, Bar-Joseph Z. Lu Y, et al. Among authors: simon i. Genome Biol. 2007;8(7):R146. doi: 10.1186/gb-2007-8-7-r146. Genome Biol. 2007. PMID: 17650318 Free PMC article.

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