Deane CM - Search Results

1

Using phylogeny to improve genome-wide distant homology recognition.

Abeln S, Teubner C, Deane CM. Abeln S, et al. Among authors: deane cm. PLoS Comput Biol. 2007 Jan 19;3(1):e3. doi: 10.1371/journal.pcbi.0030003. Epub 2006 Nov 20. PLoS Comput Biol. 2007. PMID: 17238281 Free PMC article.

2

How old is your fold?

Winstanley HF, Abeln S, Deane CM. Winstanley HF, et al. Among authors: deane cm. Bioinformatics. 2005 Jun;21 Suppl 1:i449-58. doi: 10.1093/bioinformatics/bti1008. Bioinformatics. 2005. PMID: 15961490

3

Fold usage on genomes and protein fold evolution.

Abeln S, Deane CM. Abeln S, et al. Among authors: deane cm. Proteins. 2005 Sep 1;60(4):690-700. doi: 10.1002/prot.20506. Proteins. 2005. PMID: 16001400

4

Predicting and validating protein interactions using network structure.

Chen PY, Deane CM, Reinert G. Chen PY, et al. Among authors: deane cm. PLoS Comput Biol. 2008 Jul 25;4(7):e1000118. doi: 10.1371/journal.pcbi.1000118. PLoS Comput Biol. 2008. PMID: 18654616 Free PMC article.

5

What evidence is there for the homology of protein-protein interactions?

Lewis AC, Jones NS, Porter MA, Deane CM. Lewis AC, et al. Among authors: deane cm. PLoS Comput Biol. 2012;8(9):e1002645. doi: 10.1371/journal.pcbi.1002645. Epub 2012 Sep 20. PLoS Comput Biol. 2012. PMID: 23028270 Free PMC article.

6

Exploring fold space preferences of new-born and ancient protein superfamilies.

Edwards H, Abeln S, Deane CM. Edwards H, et al. Among authors: deane cm. PLoS Comput Biol. 2013;9(11):e1003325. doi: 10.1371/journal.pcbi.1003325. Epub 2013 Nov 14. PLoS Comput Biol. 2013. PMID: 24244135 Free PMC article.

7

Sequence-structure homology recognition by iterative alignment refinement and comparative modeling.

Williams MG, Shirai H, Shi J, Nagendra HG, Mueller J, Mizuguchi K, Miguel RN, Lovell SC, Innis CA, Deane CM, Chen L, Campillo N, Burke DF, Blundell TL, de Bakker PI. Williams MG, et al. Among authors: deane cm. Proteins. 2001;Suppl 5:92-7. doi: 10.1002/prot.1169. Proteins. 2001. PMID: 11835486

8

Protein protein interactions, evolutionary rate, abundance and age.

Saeed R, Deane CM. Saeed R, et al. Among authors: deane cm. BMC Bioinformatics. 2006 Mar 13;7:128. doi: 10.1186/1471-2105-7-128. BMC Bioinformatics. 2006. PMID: 16533385 Free PMC article.

9

A microtubule interactome: complexes with roles in cell cycle and mitosis.

Hughes JR, Meireles AM, Fisher KH, Garcia A, Antrobus PR, Wainman A, Zitzmann N, Deane C, Ohkura H, Wakefield JG. Hughes JR, et al. PLoS Biol. 2008 Apr 22;6(4):e98. doi: 10.1371/journal.pbio.0060098. PLoS Biol. 2008. PMID: 18433294 Free PMC article.

10

iMembrane: homology-based membrane-insertion of proteins.

Kelm S, Shi J, Deane CM. Kelm S, et al. Among authors: deane cm. Bioinformatics. 2009 Apr 15;25(8):1086-8. doi: 10.1093/bioinformatics/btp102. Epub 2009 Feb 23. Bioinformatics. 2009. PMID: 19237449 Free PMC article.

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