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Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.
Brahmachary M, Schönbach C, Yang L, Huang E, Tan SL, Chowdhary R, Krishnan SP, Lin CY, Hume DA, Kai C, Kawai J, Carninci P, Hayashizaki Y, Bajic VB. Brahmachary M, et al. Among authors: kawai j. BMC Bioinformatics. 2006 Dec 18;7 Suppl 5(Suppl 5):S8. doi: 10.1186/1471-2105-7-S5-S8. BMC Bioinformatics. 2006. PMID: 17254313 Free PMC article.
Mice and men: their promoter properties.
Bajic VB, Tan SL, Christoffels A, Schönbach C, Lipovich L, Yang L, Hofmann O, Kruger A, Hide W, Kai C, Kawai J, Hume DA, Carninci P, Hayashizaki Y. Bajic VB, et al. Among authors: kawai j. PLoS Genet. 2006 Apr;2(4):e54. doi: 10.1371/journal.pgen.0020054. Epub 2006 Apr 28. PLoS Genet. 2006. PMID: 16683032 Free PMC article.
Large-scale clustering of CAGE tag expression data.
Shimokawa K, Okamura-Oho Y, Kurita T, Frith MC, Kawai J, Carninci P, Hayashizaki Y. Shimokawa K, et al. Among authors: kawai j. BMC Bioinformatics. 2007 May 21;8:161. doi: 10.1186/1471-2105-8-161. BMC Bioinformatics. 2007. PMID: 17517134 Free PMC article.
Genome-wide analysis of mammalian promoter architecture and evolution.
Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engström PG, Frith MC, Forrest AR, Alkema WB, Tan SL, Plessy C, Kodzius R, Ravasi T, Kasukawa T, Fukuda S, Kanamori-Katayama M, Kitazume Y, Kawaji H, Kai C, Nakamura M, Konno H, Nakano K, Mottagui-Tabar S, Arner P, Chesi A, Gustincich S, Persichetti F, Suzuki H, Grimmond SM, Wells CA, Orlando V, Wahlestedt C, Liu ET, Harbers M, Kawai J, Bajic VB, Hume DA, Hayashizaki Y. Carninci P, et al. Among authors: kawai j. Nat Genet. 2006 Jun;38(6):626-35. doi: 10.1038/ng1789. Epub 2006 Apr 28. Nat Genet. 2006. PMID: 16645617
Heterotachy in mammalian promoter evolution.
Taylor MS, Kai C, Kawai J, Carninci P, Hayashizaki Y, Semple CA. Taylor MS, et al. Among authors: kawai j. PLoS Genet. 2006 Apr;2(4):e30. doi: 10.1371/journal.pgen.0020030. Epub 2006 Apr 28. PLoS Genet. 2006. PMID: 16683025 Free PMC article.
Complex Loci in human and mouse genomes.
Engström PG, Suzuki H, Ninomiya N, Akalin A, Sessa L, Lavorgna G, Brozzi A, Luzi L, Tan SL, Yang L, Kunarso G, Ng EL, Batalov S, Wahlestedt C, Kai C, Kawai J, Carninci P, Hayashizaki Y, Wells C, Bajic VB, Orlando V, Reid JF, Lenhard B, Lipovich L. Engström PG, et al. Among authors: kawai j. PLoS Genet. 2006 Apr;2(4):e47. doi: 10.1371/journal.pgen.0020047. Epub 2006 Apr 28. PLoS Genet. 2006. PMID: 16683030 Free PMC article.
Dynamic usage of transcription start sites within core promoters.
Kawaji H, Frith MC, Katayama S, Sandelin A, Kai C, Kawai J, Carninci P, Hayashizaki Y. Kawaji H, et al. Among authors: kawai j. Genome Biol. 2006;7(12):R118. doi: 10.1186/gb-2006-7-12-r118. Genome Biol. 2006. PMID: 17156492 Free PMC article.
FREP: a database of functional repeats in mouse cDNAs.
Nagashima T, Matsuda H, Silva DG, Petrovsky N, Konagaya A, Schönbach C, Kasukawa T, Arakawa T, Carninci P, Kawai J, Hayashizaki Y; RIKEN GER Group; Genome Science Laoratory Members. Nagashima T, et al. Among authors: kawai j. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D471-5. doi: 10.1093/nar/gkh123. Nucleic Acids Res. 2004. PMID: 14681460 Free PMC article.
399 results