O'Geen H - Search Results

1

Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs.

O'Geen H, Squazzo SL, Iyengar S, Blahnik K, Rinn JL, Chang HY, Green R, Farnham PJ. O'Geen H, et al. PLoS Genet. 2007 Jun;3(6):e89. doi: 10.1371/journal.pgen.0030089. Epub 2007 Apr 19. PLoS Genet. 2007. PMID: 17542650 Free PMC article.

2

Suz12 binds to silenced regions of the genome in a cell-type-specific manner.

Squazzo SL, O'Geen H, Komashko VM, Krig SR, Jin VX, Jang SW, Margueron R, Reinberg D, Green R, Farnham PJ. Squazzo SL, et al. Genome Res. 2006 Jul;16(7):890-900. doi: 10.1101/gr.5306606. Epub 2006 Jun 2. Genome Res. 2006. PMID: 16751344 Free PMC article.

3

Comparison of sample preparation methods for ChIP-chip assays.

O'Geen H, Nicolet CM, Blahnik K, Green R, Farnham PJ. O'Geen H, et al. Biotechniques. 2006 Nov;41(5):577-80. doi: 10.2144/000112268. Biotechniques. 2006. PMID: 17140114 Free PMC article.

4

Identification of genes directly regulated by the oncogene ZNF217 using chromatin immunoprecipitation (ChIP)-chip assays.

Krig SR, Jin VX, Bieda MC, O'Geen H, Yaswen P, Green R, Farnham PJ. Krig SR, et al. J Biol Chem. 2007 Mar 30;282(13):9703-9712. doi: 10.1074/jbc.M611752200. Epub 2007 Jan 26. J Biol Chem. 2007. PMID: 17259635 Free PMC article.

5

Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches.

Jin VX, O'Geen H, Iyengar S, Green R, Farnham PJ. Jin VX, et al. Genome Res. 2007 Jun;17(6):807-17. doi: 10.1101/gr.6006107. Genome Res. 2007. PMID: 17567999 Free PMC article.

6

Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells.

Komashko VM, Acevedo LG, Squazzo SL, Iyengar SS, Rabinovich A, O'Geen H, Green R, Farnham PJ. Komashko VM, et al. Genome Res. 2008 Apr;18(4):521-32. doi: 10.1101/gr.074609.107. Epub 2008 Mar 17. Genome Res. 2008. PMID: 18347325 Free PMC article.

7

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

Blahnik KR, Dou L, O'Geen H, McPhillips T, Xu X, Cao AR, Iyengar S, Nicolet CM, Ludäscher B, Korf I, Farnham PJ. Blahnik KR, et al. Nucleic Acids Res. 2010 Jan;38(3):e13. doi: 10.1093/nar/gkp1012. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906703 Free PMC article.

8

Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy.

Fujiwara T, O'Geen H, Keles S, Blahnik K, Linnemann AK, Kang YA, Choi K, Farnham PJ, Bresnick EH. Fujiwara T, et al. Mol Cell. 2009 Nov 25;36(4):667-81. doi: 10.1016/j.molcel.2009.11.001. Mol Cell. 2009. PMID: 19941826 Free PMC article.

9

Using ChIP-seq technology to identify targets of zinc finger transcription factors.

O'Geen H, Frietze S, Farnham PJ. O'Geen H, et al. Methods Mol Biol. 2010;649:437-55. doi: 10.1007/978-1-60761-753-2_27. Methods Mol Biol. 2010. PMID: 20680851 Free PMC article.

10

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF. Harris RA, et al. Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19. Nat Biotechnol. 2010. PMID: 20852635 Free PMC article.

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