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Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.
Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Brown JB, Bickel P, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Stone EA, Rosenbloom KR, Kent WJ, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Hinrichs A, Trumbower H, Clawson H, Zweig A, Kuhn RM, Barber G, Harte R, Karolchik D, Field MA, Moore RA, Matthewson CA, Schein JE, Marra MA, Antonarakis SE, Batzoglou S, Goldman N, Hardison R, Haussler D, Miller W, Pachter L, Green ED, Sidow A. Margulies EH, et al. Among authors: hardison r. Genome Res. 2007 Jun;17(6):760-74. doi: 10.1101/gr.6034307. Genome Res. 2007. PMID: 17567995 Free PMC article.
A space-efficient algorithm for local similarities.
Huang XQ, Hardison RC, Miller W. Huang XQ, et al. Among authors: hardison rc. Comput Appl Biosci. 1990 Oct;6(4):373-81. doi: 10.1093/bioinformatics/6.4.373. Comput Appl Biosci. 1990. PMID: 2257499
Constrained sequence alignment.
Chao KM, Hardison RC, Miller W. Chao KM, et al. Among authors: hardison rc. Bull Math Biol. 1993 May;55(3):503-24. doi: 10.1007/BF02460648. Bull Math Biol. 1993. PMID: 8298508
Chaining multiple-alignment blocks.
Zhang Z, Raghavachari B, Hardison RC, Miller W. Zhang Z, et al. Among authors: hardison rc. J Comput Biol. 1994 Fall;1(3):217-26. doi: 10.1089/cmb.1994.1.217. J Comput Biol. 1994. PMID: 8790466
315 results