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Model-based analysis of two-color arrays (MA2C).
Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS. Song JS, et al. Among authors: li w. Genome Biol. 2007;8(8):R178. doi: 10.1186/gb-2007-8-8-r178. Genome Biol. 2007. PMID: 17727723 Free PMC article.
Model-based analysis of tiling-arrays for ChIP-chip.
Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Johnson WE, et al. Among authors: li w. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12457-62. doi: 10.1073/pnas.0601180103. Epub 2006 Aug 8. Proc Natl Acad Sci U S A. 2006. PMID: 16895995 Free PMC article.
Microarray blob-defect removal improves array analysis.
Song JS, Maghsoudi K, Li W, Fox E, Quackenbush J, Shirley Liu X. Song JS, et al. Among authors: li w. Bioinformatics. 2007 Apr 15;23(8):966-71. doi: 10.1093/bioinformatics/btm043. Epub 2007 Mar 1. Bioinformatics. 2007. PMID: 17332024
xMAN: extreme MApping of OligoNucleotides.
Li W, Carroll JS, Brown M, Liu xS. Li W, et al. BMC Genomics. 2008;9 Suppl 1(Suppl 1):S20. doi: 10.1186/1471-2164-9-S1-S20. BMC Genomics. 2008. PMID: 18366610 Free PMC article.
Model-based analysis of ChIP-Seq (MACS).
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Zhang Y, et al. Among authors: li w. Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17. Genome Biol. 2008. PMID: 18798982 Free PMC article.
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, Kapranov P, Nix DA, Gingeras TR, Zhang X, Holster H, Jiang N, Green RD, Song JS, McCuine SA, Anton E, Nguyen L, Trinklein ND, Ye Z, Ching K, Hawkins D, Ren B, Scacheri PC, Rozowsky J, Karpikov A, Euskirchen G, Weissman S, Gerstein M, Snyder M, Yang A, Moqtaderi Z, Hirsch H, Shulha HP, Fu Y, Weng Z, Struhl K, Myers RM, Lieb JD, Liu XS. Johnson DS, et al. Among authors: li w. Genome Res. 2008 Mar;18(3):393-403. doi: 10.1101/gr.7080508. Epub 2008 Feb 7. Genome Res. 2008. PMID: 18258921 Free PMC article.
82,206 results
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