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Multidimensional annotation of the Escherichia coli K-12 genome.
Karp PD, Keseler IM, Shearer A, Latendresse M, Krummenacker M, Paley SM, Paulsen I, Collado-Vides J, Gama-Castro S, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spínola MI, Bonavides-Martinez C, Ingraham J. Karp PD, et al. Nucleic Acids Res. 2007;35(22):7577-90. doi: 10.1093/nar/gkm740. Epub 2007 Oct 16. Nucleic Acids Res. 2007. PMID: 17940092 Free PMC article.
The EcoCyc Database.
Karp PD, Riley M, Saier M, Paulsen IT, Collado-Vides J, Paley SM, Pellegrini-Toole A, Bonavides C, Gama-Castro S. Karp PD, et al. Nucleic Acids Res. 2002 Jan 1;30(1):56-8. doi: 10.1093/nar/30.1.56. Nucleic Acids Res. 2002. PMID: 11752253 Free PMC article.
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.
Salgado H, Gama-Castro S, Martínez-Antonio A, Díaz-Peredo E, Sánchez-Solano F, Peralta-Gil M, Garcia-Alonso D, Jiménez-Jacinto V, Santos-Zavaleta A, Bonavides-Martínez C, Collado-Vides J. Salgado H, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D303-6. doi: 10.1093/nar/gkh140. Nucleic Acids Res. 2004. PMID: 14681419 Free PMC article.
EcoCyc: a comprehensive database resource for Escherichia coli.
Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, Paulsen IT, Peralta-Gil M, Karp PD. Keseler IM, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D334-7. doi: 10.1093/nar/gki108. Nucleic Acids Res. 2005. PMID: 15608210 Free PMC article.
RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.
Salgado H, Gama-Castro S, Peralta-Gil M, Díaz-Peredo E, Sánchez-Solano F, Santos-Zavaleta A, Martínez-Flores I, Jiménez-Jacinto V, Bonavides-Martínez C, Segura-Salazar J, Martínez-Antonio A, Collado-Vides J. Salgado H, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D394-7. doi: 10.1093/nar/gkj156. Nucleic Acids Res. 2006. PMID: 16381895 Free PMC article.
The comprehensive updated regulatory network of Escherichia coli K-12.
Salgado H, Santos-Zavaleta A, Gama-Castro S, Peralta-Gil M, Peñaloza-Spínola MI, Martínez-Antonio A, Karp PD, Collado-Vides J. Salgado H, et al. BMC Bioinformatics. 2006 Jan 6;7:5. doi: 10.1186/1471-2105-7-5. BMC Bioinformatics. 2006. PMID: 16398937 Free PMC article.
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
Gama-Castro S, Jiménez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spinola MI, Contreras-Moreira B, Segura-Salazar J, Muñiz-Rascado L, Martínez-Flores I, Salgado H, Bonavides-Martínez C, Abreu-Goodger C, Rodríguez-Penagos C, Miranda-Ríos J, Morett E, Merino E, Huerta AM, Treviño-Quintanilla L, Collado-Vides J. Gama-Castro S, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D120-4. doi: 10.1093/nar/gkm994. Epub 2007 Dec 23. Nucleic Acids Res. 2008. PMID: 18158297 Free PMC article.
43 results