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Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: kuiper m. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
Validating module network learning algorithms using simulated data.
Michoel T, Maere S, Bonnet E, Joshi A, Saeys Y, Van den Bulcke T, Van Leemput K, van Remortel P, Kuiper M, Marchal K, Van de Peer Y. Michoel T, et al. Among authors: kuiper m. BMC Bioinformatics. 2007 May 3;8 Suppl 2(Suppl 2):S5. doi: 10.1186/1471-2105-8-S2-S5. BMC Bioinformatics. 2007. PMID: 17493254 Free PMC article.
Modeling gene and genome duplications in eukaryotes.
Maere S, De Bodt S, Raes J, Casneuf T, Van Montagu M, Kuiper M, Van de Peer Y. Maere S, et al. Among authors: kuiper m. Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5454-9. doi: 10.1073/pnas.0501102102. Epub 2005 Mar 30. Proc Natl Acad Sci U S A. 2005. PMID: 15800040 Free PMC article.
456 results