Baldi P - Search Results

1

Lossless compression of chemical fingerprints using integer entropy codes improves storage and retrieval.

Baldi P, Benz RW, Hirschberg DS, Swamidass SJ. Baldi P, et al. J Chem Inf Model. 2007 Nov-Dec;47(6):2098-109. doi: 10.1021/ci700200n. Epub 2007 Oct 30. J Chem Inf Model. 2007. PMID: 17967006 Free PMC article.

2

Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity.

Swamidass SJ, Chen J, Bruand J, Phung P, Ralaivola L, Baldi P. Swamidass SJ, et al. Among authors: baldi p. Bioinformatics. 2005 Jun;21 Suppl 1:i359-68. doi: 10.1093/bioinformatics/bti1055. Bioinformatics. 2005. PMID: 15961479

3

Graph kernels for chemical informatics.

Ralaivola L, Swamidass SJ, Saigo H, Baldi P. Ralaivola L, et al. Among authors: baldi p. Neural Netw. 2005 Oct;18(8):1093-110. doi: 10.1016/j.neunet.2005.07.009. Epub 2005 Sep 12. Neural Netw. 2005. PMID: 16157471

4

ChemDB: a public database of small molecules and related chemoinformatics resources.

Chen J, Swamidass SJ, Dou Y, Bruand J, Baldi P. Chen J, et al. Among authors: baldi p. Bioinformatics. 2005 Nov 15;21(22):4133-9. doi: 10.1093/bioinformatics/bti683. Epub 2005 Sep 20. Bioinformatics. 2005. PMID: 16174682

5

Structure-based inhibitor design of AccD5, an essential acyl-CoA carboxylase carboxyltransferase domain of Mycobacterium tuberculosis.

Lin TW, Melgar MM, Kurth D, Swamidass SJ, Purdon J, Tseng T, Gago G, Baldi P, Gramajo H, Tsai SC. Lin TW, et al. Among authors: baldi p. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3072-7. doi: 10.1073/pnas.0510580103. Epub 2006 Feb 21. Proc Natl Acad Sci U S A. 2006. PMID: 16492739 Free PMC article.

6

Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants.

Danziger SA, Swamidass SJ, Zeng J, Dearth LR, Lu Q, Chen JH, Cheng J, Hoang VP, Saigo H, Luo R, Baldi P, Brachmann RK, Lathrop RH. Danziger SA, et al. Among authors: baldi p. IEEE/ACM Trans Comput Biol Bioinform. 2006 Apr-Jun;3(2):114-25. doi: 10.1109/TCBB.2006.22. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17048398 Free PMC article.

7

Bounds and algorithms for fast exact searches of chemical fingerprints in linear and sublinear time.

Swamidass SJ, Baldi P. Swamidass SJ, et al. Among authors: baldi p. J Chem Inf Model. 2007 Mar-Apr;47(2):302-17. doi: 10.1021/ci600358f. Epub 2007 Feb 28. J Chem Inf Model. 2007. PMID: 17326616 Free PMC article.

8

One- to four-dimensional kernels for virtual screening and the prediction of physical, chemical, and biological properties.

Azencott CA, Ksikes A, Swamidass SJ, Chen JH, Ralaivola L, Baldi P. Azencott CA, et al. Among authors: baldi p. J Chem Inf Model. 2007 May-Jun;47(3):965-74. doi: 10.1021/ci600397p. Epub 2007 Mar 6. J Chem Inf Model. 2007. PMID: 17338509

9

Mathematical correction for fingerprint similarity measures to improve chemical retrieval.

Swamidass SJ, Baldi P. Swamidass SJ, et al. Among authors: baldi p. J Chem Inf Model. 2007 May-Jun;47(3):952-64. doi: 10.1021/ci600526a. Epub 2007 Apr 20. J Chem Inf Model. 2007. PMID: 17444629

10

ChemDB update--full-text search and virtual chemical space.

Chen JH, Linstead E, Swamidass SJ, Wang D, Baldi P. Chen JH, et al. Among authors: baldi p. Bioinformatics. 2007 Sep 1;23(17):2348-51. doi: 10.1093/bioinformatics/btm341. Epub 2007 Jun 28. Bioinformatics. 2007. PMID: 17599932

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