Zhang Z - Search Results

1

Classification algorithms for phenotype prediction in genomics and proteomics.

Ressom HW, Varghese RS, Zhang Z, Xuan J, Clarke R. Ressom HW, et al. Among authors: zhang z. Front Biosci. 2008 Jan 1;13:691-708. doi: 10.2741/2712. Front Biosci. 2008. PMID: 17981580 Free PMC article. Review.

2

UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.

Wang N, Gong T, Clarke R, Chen L, Shih IeM, Zhang Z, Levine DA, Xuan J, Wang Y. Wang N, et al. Among authors: zhang z. Bioinformatics. 2015 Jan 1;31(1):137-9. doi: 10.1093/bioinformatics/btu607. Epub 2014 Sep 10. Bioinformatics. 2015. PMID: 25212756 Free PMC article.

3

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.

Tian Y, Zhang B, Hoffman EP, Clarke R, Zhang Z, Shih IeM, Xuan J, Herrington DM, Wang Y. Tian Y, et al. Among authors: zhang b, zhang z. Bioinformatics. 2015 Jan 15;31(2):287-9. doi: 10.1093/bioinformatics/btu632. Epub 2014 Sep 30. Bioinformatics. 2015. PMID: 25273109 Free PMC article.

4

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R. Chen L, et al. Among authors: zhang z. BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416. BMC Bioinformatics. 2008. PMID: 18837990 Free PMC article.

5

Biomarker identification by knowledge-driven multilevel ICA and motif analysis.

Chen L, Xuan J, Wang C, Wang Y, Shih IeM, Wang TL, Zhang Z, Clarke R, Hoffman EP. Chen L, et al. Among authors: zhang z. Int J Data Min Bioinform. 2009;3(4):365-81. doi: 10.1504/ijdmb.2009.029201. Int J Data Min Bioinform. 2009. PMID: 20052902

6

Differential dependency network analysis to identify condition-specific topological changes in biological networks.

Zhang B, Li H, Riggins RB, Zhan M, Xuan J, Zhang Z, Hoffman EP, Clarke R, Wang Y. Zhang B, et al. Among authors: zhang z. Bioinformatics. 2009 Feb 15;25(4):526-32. doi: 10.1093/bioinformatics/btn660. Epub 2008 Dec 26. Bioinformatics. 2009. PMID: 19112081 Free PMC article.

7

BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumor.

Fu Y, Yu G, Levine DA, Wang N, Shih IeM, Zhang Z, Clarke R, Wang Y. Fu Y, et al. Among authors: zhang z. Sci Rep. 2015 Sep 9;5:13955. doi: 10.1038/srep13955. Sci Rep. 2015. PMID: 26350498 Free PMC article.

8

Integrative network analysis to identify aberrant pathway networks in ovarian cancer.

Chen L, Xuan J, Gu J, Wang Y, Zhang Z, Wang TL, Shih IeM. Chen L, et al. Among authors: zhang z. Pac Symp Biocomput. 2012:31-42. Pac Symp Biocomput. 2012. PMID: 22174260 Free PMC article.

9

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.

Tian Y, Zhang B, Hoffman EP, Clarke R, Zhang Z, Shih IeM, Xuan J, Herrington DM, Wang Y. Tian Y, et al. Among authors: zhang b, zhang z. BMC Syst Biol. 2014 Jul 24;8:87. doi: 10.1186/s12918-014-0087-1. BMC Syst Biol. 2014. PMID: 25055984 Free PMC article.

10

Mathematical modelling of transcriptional heterogeneity identifies novel markers and subpopulations in complex tissues.

Wang N, Hoffman EP, Chen L, Chen L, Zhang Z, Liu C, Yu G, Herrington DM, Clarke R, Wang Y. Wang N, et al. Among authors: zhang z. Sci Rep. 2016 Jan 7;6:18909. doi: 10.1038/srep18909. Sci Rep. 2016. PMID: 26739359 Free PMC article.

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