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Xenbase: a Xenopus biology and genomics resource.
Bowes JB, Snyder KA, Segerdell E, Gibb R, Jarabek C, Noumen E, Pollet N, Vize PD. Bowes JB, et al. Among authors: snyder ka. Nucleic Acids Res. 2008 Jan;36(Database issue):D761-7. doi: 10.1093/nar/gkm826. Epub 2007 Nov 4. Nucleic Acids Res. 2008. PMID: 17984085 Free PMC article.
Xenbase: expansion and updates of the Xenopus model organism database.
James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD. James-Zorn C, et al. Among authors: snyder k. Nucleic Acids Res. 2013 Jan;41(Database issue):D865-70. doi: 10.1093/nar/gks1025. Epub 2012 Nov 3. Nucleic Acids Res. 2013. PMID: 23125366 Free PMC article.
Xenbase: gene expression and improved integration.
Bowes JB, Snyder KA, Segerdell E, Jarabek CJ, Azam K, Zorn AM, Vize PD. Bowes JB, et al. Among authors: snyder ka. Nucleic Acids Res. 2010 Jan;38(Database issue):D607-12. doi: 10.1093/nar/gkp953. Epub 2009 Nov 1. Nucleic Acids Res. 2010. PMID: 19884130 Free PMC article.
The Xenbase literature curation process.
Bowes JB, Snyder KA, James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Bhattacharyya B, Zorn AM, Vize PD. Bowes JB, et al. Among authors: snyder ka. Database (Oxford). 2013 Jan 9;2013:bas046. doi: 10.1093/database/bas046. Print 2013. Database (Oxford). 2013. PMID: 23303299 Free PMC article.
Projecting 2D gene expression data into 3D and 4D space.
Gerth VE, Katsuyama K, Snyder KA, Bowes JB, Kitayama A, Ueno N, Vize PD. Gerth VE, et al. Among authors: snyder ka. Dev Dyn. 2007 Apr;236(4):1036-43. doi: 10.1002/dvdy.21120. Dev Dyn. 2007. PMID: 17366623 Free article.
The Biomolecular Interaction Network Database and related tools 2005 update.
Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, D'Abreo C, Donaldson I, Dorairajoo D, Dumontier MJ, Dumontier MR, Earles V, Farrall R, Feldman H, Garderman E, Gong Y, Gonzaga R, Grytsan V, Gryz E, Gu V, Haldorsen E, Halupa A, Haw R, Hrvojic A, Hurrell L, Isserlin R, Jack F, Juma F, Khan A, Kon T, Konopinsky S, Le V, Lee E, Ling S, Magidin M, Moniakis J, Montojo J, Moore S, Muskat B, Ng I, Paraiso JP, Parker B, Pintilie G, Pirone R, Salama JJ, Sgro S, Shan T, Shu Y, Siew J, Skinner D, Snyder K, Stasiuk R, Strumpf D, Tuekam B, Tao S, Wang Z, White M, Willis R, Wolting C, Wong S, Wrong A, Xin C, Yao R, Yates B, Zhang S, Zheng K, Pawson T, Ouellette BF, Hogue CW. Alfarano C, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D418-24. doi: 10.1093/nar/gki051. Nucleic Acids Res. 2005. PMID: 15608229 Free PMC article.
A complete small molecule dataset from the protein data bank.
Feldman HJ, Snyder KA, Ticoll A, Pintilie G, Hogue CW. Feldman HJ, et al. Among authors: snyder ka. FEBS Lett. 2006 Mar 6;580(6):1649-53. doi: 10.1016/j.febslet.2006.02.003. Epub 2006 Feb 17. FEBS Lett. 2006. PMID: 16494871 Free article.
Domain-based small molecule binding site annotation.
Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW. Snyder KA, et al. BMC Bioinformatics. 2006 Mar 17;7:152. doi: 10.1186/1471-2105-7-152. BMC Bioinformatics. 2006. PMID: 16545112 Free PMC article.
65 results