Mignon D - Search Results

1

Computational protein design: software implementation, parameter optimization, and performance of a simple model.

Schmidt Am Busch M, Lopes A, Mignon D, Simonson T. Schmidt Am Busch M, et al. Among authors: mignon d. J Comput Chem. 2008 May;29(7):1092-102. doi: 10.1002/jcc.20870. J Comput Chem. 2008. PMID: 18069664

2

Computational protein design as a tool for fold recognition.

am Busch MS, Mignon D, Simonson T. am Busch MS, et al. Among authors: mignon d. Proteins. 2009 Oct;77(1):139-58. doi: 10.1002/prot.22426. Proteins. 2009. PMID: 19408297

3

Computational protein design: the Proteus software and selected applications.

Simonson T, Gaillard T, Mignon D, Schmidt am Busch M, Lopes A, Amara N, Polydorides S, Sedano A, Druart K, Archontis G. Simonson T, et al. Among authors: mignon d. J Comput Chem. 2013 Oct 30;34(28):2472-84. doi: 10.1002/jcc.23418. Epub 2013 Aug 26. J Comput Chem. 2013. PMID: 24037756

4

Proteus and the Design of Ligand Binding Sites.

Polydorides S, Michael E, Mignon D, Druart K, Archontis G, Simonson T. Polydorides S, et al. Among authors: mignon d. Methods Mol Biol. 2016;1414:77-97. doi: 10.1007/978-1-4939-3569-7_6. Methods Mol Biol. 2016. PMID: 27094287

5

Comparing three stochastic search algorithms for computational protein design: Monte Carlo, replica exchange Monte Carlo, and a multistart, steepest-descent heuristic.

Mignon D, Simonson T. Mignon D, et al. J Comput Chem. 2016 Jul 15;37(19):1781-93. doi: 10.1002/jcc.24393. Epub 2016 May 20. J Comput Chem. 2016. PMID: 27197555

6

Computational Design of the Tiam1 PDZ Domain and Its Ligand Binding.

Mignon D, Panel N, Chen X, Fuentes EJ, Simonson T. Mignon D, et al. J Chem Theory Comput. 2017 May 9;13(5):2271-2289. doi: 10.1021/acs.jctc.6b01255. Epub 2017 Apr 21. J Chem Theory Comput. 2017. PMID: 28394603

7

Comparing pairwise-additive and many-body generalized Born models for acid/base calculations and protein design.

Villa F, Mignon D, Polydorides S, Simonson T. Villa F, et al. Among authors: mignon d. J Comput Chem. 2017 Oct 30;38(28):2396-2410. doi: 10.1002/jcc.24898. Epub 2017 Jul 27. J Comput Chem. 2017. PMID: 28749575

8

Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems.

Charpentier A, Mignon D, Barbe S, Cortes J, Schiex T, Simonson T, Allouche D. Charpentier A, et al. Among authors: mignon d. J Chem Inf Model. 2019 Jan 28;59(1):127-136. doi: 10.1021/acs.jcim.8b00510. Epub 2018 Nov 14. J Chem Inf Model. 2019. PMID: 30380857

9

Physics-Based Computational Protein Design: An Update.

Mignon D, Druart K, Michael E, Opuu V, Polydorides S, Villa F, Gaillard T, Panel N, Archontis G, Simonson T. Mignon D, et al. J Phys Chem A. 2020 Dec 24;124(51):10637-10648. doi: 10.1021/acs.jpca.0c07605. Epub 2020 Nov 10. J Phys Chem A. 2020. PMID: 33170681

10

Computational Design of PDZ-Peptide Binding.

Panel N, Villa F, Opuu V, Mignon D, Simonson T. Panel N, et al. Among authors: mignon d. Methods Mol Biol. 2021;2256:237-255. doi: 10.1007/978-1-0716-1166-1_14. Methods Mol Biol. 2021. PMID: 34014526

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