Speed TP - Search Results

1

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.

Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, Weiszmann R, Celniker SE, Knowles DW, Gingeras T, Speed TP, Eisen MB, Biggin MD. Li XY, et al. Among authors: speed tp. PLoS Biol. 2008 Feb;6(2):e27. doi: 10.1371/journal.pbio.0060027. PLoS Biol. 2008. PMID: 18271625 Free PMC article.

2

The serine repeat antigen (SERA) gene family phylogeny in Plasmodium: the impact of GC content and reconciliation of gene and species trees.

Bourgon R, Delorenzi M, Sargeant T, Hodder AN, Crabb BS, Speed TP. Bourgon R, et al. Among authors: speed tp. Mol Biol Evol. 2004 Nov;21(11):2161-71. doi: 10.1093/molbev/msh228. Epub 2004 Aug 11. Mol Biol Evol. 2004. PMID: 15306658

3

SNPs in putative regulatory regions identified by human mouse comparative sequencing and transcription factor binding site data.

Banerjee P, Bahlo M, Schwartz JR, Loots GG, Houston KA, Dubchak I, Speed TP, Rubin EM. Banerjee P, et al. Among authors: speed tp. Mamm Genome. 2002 Oct;13(10):554-7. doi: 10.1007/s00335-002-2169-4. Mamm Genome. 2002. PMID: 12420132 No abstract available.

4

A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression-patterning of shared target genes in Arabidopsis.

Zhang Y, Mayba O, Pfeiffer A, Shi H, Tepperman JM, Speed TP, Quail PH. Zhang Y, et al. Among authors: speed tp. PLoS Genet. 2013;9(1):e1003244. doi: 10.1371/journal.pgen.1003244. Epub 2013 Jan 31. PLoS Genet. 2013. PMID: 23382695 Free PMC article.

5

Exon-level microarray analyses identify alternative splicing programs in breast cancer.

Lapuk A, Marr H, Jakkula L, Pedro H, Bhattacharya S, Purdom E, Hu Z, Simpson K, Pachter L, Durinck S, Wang N, Parvin B, Fontenay G, Speed T, Garbe J, Stampfer M, Bayandorian H, Dorton S, Clark TA, Schweitzer A, Wyrobek A, Feiler H, Spellman P, Conboy J, Gray JW. Lapuk A, et al. Mol Cancer Res. 2010 Jul;8(7):961-74. doi: 10.1158/1541-7786.MCR-09-0528. Epub 2010 Jul 6. Mol Cancer Res. 2010. PMID: 20605923 Free PMC article.

6

Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells.

Georlette D, Ahn S, MacAlpine DM, Cheung E, Lewis PW, Beall EL, Bell SP, Speed T, Manak JR, Botchan MR. Georlette D, et al. Genes Dev. 2007 Nov 15;21(22):2880-96. doi: 10.1101/gad.1600107. Epub 2007 Oct 31. Genes Dev. 2007. PMID: 17978103 Free PMC article.

7

Finding short DNA motifs using permuted Markov models.

Zhao X, Huang H, Speed TP. Zhao X, et al. Among authors: speed tp. J Comput Biol. 2005 Jul-Aug;12(6):894-906. doi: 10.1089/cmb.2005.12.894. J Comput Biol. 2005. PMID: 16108724

8

Estrogen receptor beta binds to and regulates three distinct classes of target genes.

Vivar OI, Zhao X, Saunier EF, Griffin C, Mayba OS, Tagliaferri M, Cohen I, Speed TP, Leitman DC. Vivar OI, et al. Among authors: speed tp. J Biol Chem. 2010 Jul 16;285(29):22059-66. doi: 10.1074/jbc.M110.114116. Epub 2010 Apr 19. J Biol Chem. 2010. PMID: 20404318 Free PMC article.

9

Analysis of gene expression in the developing mouse retina.

Díaz E, Yang YH, Ferreira T, Loh KC, Okazaki Y, Hayashizaki Y, Tessier-Lavigne M, Speed TP, Ngai J. Díaz E, et al. Among authors: speed tp. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5491-6. doi: 10.1073/pnas.0831080100. Epub 2003 Apr 17. Proc Natl Acad Sci U S A. 2003. PMID: 12702772 Free PMC article.

10

Enzymic, phylogenetic, and structural characterization of the unusual papain-like protease domain of Plasmodium falciparum SERA5.

Hodder AN, Drew DR, Epa VC, Delorenzi M, Bourgon R, Miller SK, Moritz RL, Frecklington DF, Simpson RJ, Speed TP, Pike RN, Crabb BS. Hodder AN, et al. Among authors: speed tp. J Biol Chem. 2003 Nov 28;278(48):48169-77. doi: 10.1074/jbc.M306755200. Epub 2003 Sep 17. J Biol Chem. 2003. PMID: 13679369 Free article.

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