States DJ - Search Results

1

Motif discovery in tissue-specific regulatory sequences using directed information.

Rao A, Hero AO 3rd, States DJ, Engel JD. Rao A, et al. Among authors: states dj. EURASIP J Bioinform Syst Biol. 2007;2007(1):13853. doi: 10.1155/2007/13853. EURASIP J Bioinform Syst Biol. 2007. PMID: 18340376 Free PMC article.

2

Understanding distal transcriptional regulation from sequence, expression and interactome perspectives.

Rao A, States DJ, Hero AO 3rd, Engel JD. Rao A, et al. Among authors: states dj. J Bioinform Comput Biol. 2010 Apr;8(2):219-46. doi: 10.1142/s0219720010004756. J Bioinform Comput Biol. 2010. PMID: 20401945

3

Using directed information to build biologically relevant influence networks.

Rao A, Hero AO 3rd, States DJ, Engel JD. Rao A, et al. Among authors: states dj. Comput Syst Bioinformatics Conf. 2007;6:145-56. Comput Syst Bioinformatics Conf. 2007. PMID: 17951820 Free article.

4

Inferring time-varying network topologies from gene expression data.

Rao A, Hero AO 3rd, States DJ, Engel JD. Rao A, et al. Among authors: states dj. EURASIP J Bioinform Syst Biol. 2007;2007(1):51947. doi: 10.1155/2007/51947. EURASIP J Bioinform Syst Biol. 2007. PMID: 18309363 Free PMC article.

5

Using directed information to build biologically relevant influence networks.

Rao A, Hero AO 3rd, States DJ, Engel JD. Rao A, et al. Among authors: states dj. J Bioinform Comput Biol. 2008 Jun;6(3):493-519. doi: 10.1142/s0219720008003515. J Bioinform Comput Biol. 2008. PMID: 18574860

6

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

Hur J, Schuyler AD, States DJ, Feldman EL. Hur J, et al. Among authors: states dj. Bioinformatics. 2009 Mar 15;25(6):838-40. doi: 10.1093/bioinformatics/btp049. Epub 2009 Feb 2. Bioinformatics. 2009. PMID: 19188191 Free PMC article.

7

SAGA: a subgraph matching tool for biological graphs.

Tian Y, McEachin RC, Santos C, States DJ, Patel JM. Tian Y, et al. Among authors: states dj. Bioinformatics. 2007 Jan 15;23(2):232-9. doi: 10.1093/bioinformatics/btl571. Epub 2006 Nov 16. Bioinformatics. 2007. PMID: 17110368

8

Integration of genome and chromatin structure with gene expression profiles to predict c-MYC recognition site binding and function.

Chen Y, Blackwell TW, Chen J, Gao J, Lee AW, States DJ. Chen Y, et al. Among authors: states dj. PLoS Comput Biol. 2007 Apr 6;3(4):e63. doi: 10.1371/journal.pcbi.0030063. PLoS Comput Biol. 2007. PMID: 17411336 Free PMC article.

9

Computationally identifying novel NF-kappa B-regulated immune genes in the human genome.

Liu R, McEachin RC, States DJ. Liu R, et al. Among authors: states dj. Genome Res. 2003 Apr;13(4):654-61. doi: 10.1101/gr.911803. Epub 2003 Mar 12. Genome Res. 2003. PMID: 12654722 Free PMC article.

10

Evolutionary-conserved gene expression response profiles across mammalian tissues.

Chen J, Blackwell TW, Fermin D, Menon R, Chen Y, Gao J, Lee AW, States DJ. Chen J, et al. Among authors: states dj. OMICS. 2007 Spring;11(1):96-115. doi: 10.1089/omi.2006.0007. OMICS. 2007. PMID: 17411398 Free article.

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