Bodenreider O - Search Results

1

The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site.

Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Mariño-Ramírez L. Tharakaraman K, et al. Among authors: bodenreider o. Nucleic Acids Res. 2008 May;36(8):2777-86. doi: 10.1093/nar/gkn137. Epub 2008 Mar 26. Nucleic Acids Res. 2008. PMID: 18367472 Free PMC article.

2

Identification of cis-regulatory elements in gene co-expression networks using A-GLAM.

Mariño-Ramírez L, Tharakaraman K, Bodenreider O, Spouge J, Landsman D. Mariño-Ramírez L, et al. Among authors: bodenreider o. Methods Mol Biol. 2009;541:1-22. doi: 10.1007/978-1-59745-243-4_1. Methods Mol Biol. 2009. PMID: 19381547 Free PMC article. Review.

3

Co-evolutionary rates of functionally related yeast genes.

Mariño-Ramírez L, Bodenreider O, Kantz N, Jordan IK. Mariño-Ramírez L, et al. Among authors: bodenreider o. Evol Bioinform Online. 2006;2:271-6. Evol Bioinform Online. 2006. PMID: 18345352 Free PMC article.

4

Global similarity and local divergence in human and mouse gene co-expression networks.

Tsaparas P, Mariño-Ramírez L, Bodenreider O, Koonin EV, Jordan IK. Tsaparas P, et al. Among authors: bodenreider o. BMC Evol Biol. 2006 Sep 12;6:70. doi: 10.1186/1471-2148-6-70. BMC Evol Biol. 2006. PMID: 16968540 Free PMC article.

5

The Unified Medical Language System (UMLS): integrating biomedical terminology.

Bodenreider O. Bodenreider O. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D267-70. doi: 10.1093/nar/gkh061. Nucleic Acids Res. 2004. PMID: 14681409 Free PMC article.

6

A framework for comparing phenotype annotations of orthologous genes.

Bodenreider O, Burgun A. Bodenreider O, et al. Stud Health Technol Inform. 2010;160(Pt 2):1309-13. Stud Health Technol Inform. 2010. PMID: 20841896 Free PMC article.

7

Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository.

Zeng K, Bodenreider O. Zeng K, et al. Among authors: bodenreider o. AMIA Annu Symp Proc. 2007 Oct 11:1170. AMIA Annu Symp Proc. 2007. PMID: 18694266 No abstract available.

8

Investigating implicit knowledge in ontologies with application to the anatomical domain.

Zhang S, Bodenreider O. Zhang S, et al. Among authors: bodenreider o. Pac Symp Biocomput. 2004:250-61. doi: 10.1142/9789812704856_0024. Pac Symp Biocomput. 2004. PMID: 14992508 Free PMC article.

9

A mutation-centric approach to identifying pharmacogenomic relations in text.

Rance B, Doughty E, Demner-Fushman D, Kann MG, Bodenreider O. Rance B, et al. Among authors: bodenreider o. J Biomed Inform. 2012 Oct;45(5):835-41. doi: 10.1016/j.jbi.2012.05.003. Epub 2012 Jun 7. J Biomed Inform. 2012. PMID: 22683993 Free PMC article.

10

Bio-ontologies: current trends and future directions.

Bodenreider O, Stevens R. Bodenreider O, et al. Brief Bioinform. 2006 Sep;7(3):256-74. doi: 10.1093/bib/bbl027. Epub 2006 Aug 9. Brief Bioinform. 2006. PMID: 16899495 Free PMC article. Review.

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