Sidow A - Search Results

1

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.

Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM. Valouev A, et al. Among authors: sidow a. Genome Res. 2008 Jul;18(7):1051-63. doi: 10.1101/gr.076463.108. Epub 2008 May 13. Genome Res. 2008. PMID: 18477713 Free PMC article.

2

Determinants of nucleosome organization in primary human cells.

Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Valouev A, et al. Among authors: sidow a. Nature. 2011 May 22;474(7352):516-20. doi: 10.1038/nature10002. Nature. 2011. PMID: 21602827 Free PMC article.

3

An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo.

Gracey LE, Chen ZY, Maniar JM, Valouev A, Sidow A, Kay MA, Fire AZ. Gracey LE, et al. Among authors: sidow a. Epigenetics Chromatin. 2010 Jul 1;3(1):13. doi: 10.1186/1756-8935-3-13. Epigenetics Chromatin. 2010. PMID: 20594331 Free PMC article.

4

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements.

Kundaje A, Kyriazopoulou-Panagiotopoulou S, Libbrecht M, Smith CL, Raha D, Winters EE, Johnson SM, Snyder M, Batzoglou S, Sidow A. Kundaje A, et al. Among authors: sidow a. Genome Res. 2012 Sep;22(9):1735-47. doi: 10.1101/gr.136366.111. Genome Res. 2012. PMID: 22955985 Free PMC article.

5

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.

Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A. Valouev A, et al. Among authors: sidow a. Nat Methods. 2008 Sep;5(9):829-34. doi: 10.1038/nmeth.1246. Nat Methods. 2008. PMID: 19160518 Free PMC article.

6

The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution.

Hill MM, Broman KW, Stupka E, Smith WC, Jiang D, Sidow A. Hill MM, et al. Among authors: sidow a. Genome Res. 2008 Aug;18(8):1369-79. doi: 10.1101/gr.078576.108. Epub 2008 Jun 2. Genome Res. 2008. PMID: 18519652 Free PMC article.

7

Discovery of recurrent structural variants in nasopharyngeal carcinoma.

Valouev A, Weng Z, Sweeney RT, Varma S, Le QT, Kong C, Sidow A, West RB. Valouev A, et al. Among authors: sidow a. Genome Res. 2014 Feb;24(2):300-9. doi: 10.1101/gr.156224.113. Epub 2013 Nov 8. Genome Res. 2014. PMID: 24214394 Free PMC article.

8

Read clouds uncover variation in complex regions of the human genome.

Bishara A, Liu Y, Weng Z, Kashef-Haghighi D, Newburger DE, West R, Sidow A, Batzoglou S. Bishara A, et al. Among authors: sidow a. Genome Res. 2015 Oct;25(10):1570-80. doi: 10.1101/gr.191189.115. Epub 2015 Aug 18. Genome Res. 2015. PMID: 26286554 Free PMC article.

9

Distribution and intensity of constraint in mammalian genomic sequence.

Cooper GM, Stone EA, Asimenos G; NISC Comparative Sequencing Program; Green ED, Batzoglou S, Sidow A. Cooper GM, et al. Among authors: sidow a. Genome Res. 2005 Jul;15(7):901-13. doi: 10.1101/gr.3577405. Epub 2005 Jun 17. Genome Res. 2005. PMID: 15965027 Free PMC article.

10

Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes.

Goode DL, Cooper GM, Schmutz J, Dickson M, Gonzales E, Tsai M, Karra K, Davydov E, Batzoglou S, Myers RM, Sidow A. Goode DL, et al. Among authors: sidow a. Genome Res. 2010 Mar;20(3):301-10. doi: 10.1101/gr.102210.109. Epub 2010 Jan 12. Genome Res. 2010. PMID: 20067941 Free PMC article.

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