Hoffman EP - Search Results

1

A ground truth based comparative study on clustering of gene expression data.

Zhu Y, Wang Z, Miller DJ, Clarke R, Xuan J, Hoffman EP, Wang Y. Zhu Y, et al. Among authors: hoffman ep. Front Biosci. 2008 May 1;13:3839-49. doi: 10.2741/2972. Front Biosci. 2008. PMID: 18508478 Free PMC article. Review.

2

Phenotypic-specific gene module discovery using a diagnostic tree and caBIG VISDA.

Zhu Y, Wang Z, Feng Y, Xuan J, Miller DJ, Hoffman EP, Wang Y. Zhu Y, et al. Among authors: hoffman ep. Conf Proc IEEE Eng Med Biol Soc. 2006;2006:5767-70. doi: 10.1109/IEMBS.2006.260031. Conf Proc IEEE Eng Med Biol Soc. 2006. PMID: 17946331

3

Latent variable and nICA modeling of pathway gene module composite.

Gong T, Zhu Y, Xuan J, Li H, Clarke R, Hoffman EP, Wang Y. Gong T, et al. Among authors: hoffman ep. Conf Proc IEEE Eng Med Biol Soc. 2006;2006:5872-5. doi: 10.1109/IEMBS.2006.260697. Conf Proc IEEE Eng Med Biol Soc. 2006. PMID: 17946342

4

caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data.

Zhu Y, Li H, Miller DJ, Wang Z, Xuan J, Clarke R, Hoffman EP, Wang Y. Zhu Y, et al. Among authors: hoffman ep. BMC Bioinformatics. 2008 Sep 18;9:383. doi: 10.1186/1471-2105-9-383. BMC Bioinformatics. 2008. PMID: 18801195 Free PMC article.

5

Knowledge-guided gene ranking by coordinative component analysis.

Wang C, Xuan J, Li H, Wang Y, Zhan M, Hoffman EP, Clarke R. Wang C, et al. Among authors: hoffman ep. BMC Bioinformatics. 2010 Mar 30;11:162. doi: 10.1186/1471-2105-11-162. BMC Bioinformatics. 2010. PMID: 20353603 Free PMC article.

6

Motif-guided sparse decomposition of gene expression data for regulatory module identification.

Gong T, Xuan J, Chen L, Riggins RB, Li H, Hoffman EP, Clarke R, Wang Y. Gong T, et al. Among authors: hoffman ep. BMC Bioinformatics. 2011 Mar 22;12:82. doi: 10.1186/1471-2105-12-82. BMC Bioinformatics. 2011. PMID: 21426557 Free PMC article.

7

Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.

Wang Z, Wang Y, Xuan J, Dong Y, Bakay M, Feng Y, Clarke R, Hoffman EP. Wang Z, et al. Among authors: hoffman ep. Bioinformatics. 2006 Mar 15;22(6):755-61. doi: 10.1093/bioinformatics/btk036. Epub 2006 Jan 10. Bioinformatics. 2006. PMID: 16403791

8

Differential dependency network analysis to identify condition-specific topological changes in biological networks.

Zhang B, Li H, Riggins RB, Zhan M, Xuan J, Zhang Z, Hoffman EP, Clarke R, Wang Y. Zhang B, et al. Among authors: hoffman ep. Bioinformatics. 2009 Feb 15;25(4):526-32. doi: 10.1093/bioinformatics/btn660. Epub 2008 Dec 26. Bioinformatics. 2009. PMID: 19112081 Free PMC article.

9

Biomarker identification by knowledge-driven multilevel ICA and motif analysis.

Chen L, Xuan J, Wang C, Wang Y, Shih IeM, Wang TL, Zhang Z, Clarke R, Hoffman EP. Chen L, et al. Among authors: hoffman ep. Int J Data Min Bioinform. 2009;3(4):365-81. doi: 10.1504/ijdmb.2009.029201. Int J Data Min Bioinform. 2009. PMID: 20052902

10

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.

Chen L, Xuan J, Wang Y, Hoffman EP, Riggins RB, Clarke R. Chen L, et al. Among authors: hoffman ep. Int J Comput Biol Drug Des. 2009;2(1):1-20. doi: 10.1504/ijcbdd.2009.027582. Int J Comput Biol Drug Des. 2009. PMID: 20054984 Free PMC article.

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