Nam K - Search Results

1

Electrostatic interactions in the hairpin ribozyme account for the majority of the rate acceleration without chemical participation by nucleobases.

Nam K, Gao J, York DM. Nam K, et al. RNA. 2008 Aug;14(8):1501-7. doi: 10.1261/rna.863108. Epub 2008 Jun 19. RNA. 2008. PMID: 18566190 Free PMC article.

2

Dynamics of an enzymatic substitution reaction in haloalkane dehalogenase.

Nam K, Prat-Resina X, Garcia-Viloca M, Devi-Kesavan LS, Gao J. Nam K, et al. J Am Chem Soc. 2004 Feb 11;126(5):1369-76. doi: 10.1021/ja039093l. J Am Chem Soc. 2004. PMID: 14759194

3

A combined QM/MM approach to protein--ligand interactions: polarization effects of the HIV-1 protease on selected high affinity inhibitors.

Hensen C, Hermann JC, Nam K, Ma S, Gao J, Höltje HD. Hensen C, et al. Among authors: nam k. J Med Chem. 2004 Dec 30;47(27):6673-80. doi: 10.1021/jm0497343. J Med Chem. 2004. PMID: 15615516

4

QCRNA 1.0: a database of quantum calculations for RNA catalysis.

Giese TJ, Gregersen BA, Liu Y, Nam K, Mayaan E, Moser A, Range K, Faza ON, Lopez CS, de Lera AR, Schaftenaar G, Lopez X, Lee TS, Karypis G, York DM. Giese TJ, et al. Among authors: nam k. J Mol Graph Model. 2006 Dec;25(4):423-33. doi: 10.1016/j.jmgm.2006.02.011. Epub 2006 Apr 3. J Mol Graph Model. 2006. PMID: 16580853

5

Transition state stabilization and alpha-amino carbon acidity in alanine racemase.

Major DT, Nam K, Gao J. Major DT, et al. Among authors: nam k. J Am Chem Soc. 2006 Jun 28;128(25):8114-5. doi: 10.1021/ja062272t. J Am Chem Soc. 2006. PMID: 16787057

6

Mechanisms and free energies of enzymatic reactions.

Gao J, Ma S, Major DT, Nam K, Pu J, Truhlar DG. Gao J, et al. Among authors: nam k. Chem Rev. 2006 Aug;106(8):3188-209. doi: 10.1021/cr050293k. Chem Rev. 2006. PMID: 16895324 Free PMC article. Review. No abstract available.

7

Quantum mechanical/molecular mechanical simulation study of the mechanism of hairpin ribozyme catalysis.

Nam K, Gao J, York DM. Nam K, et al. J Am Chem Soc. 2008 Apr 9;130(14):4680-91. doi: 10.1021/ja0759141. Epub 2008 Mar 18. J Am Chem Soc. 2008. PMID: 18345664 Free PMC article.

8

Specific Reaction Parametrization of the AM1/d Hamiltonian for Phosphoryl Transfer Reactions: H, O, and P Atoms.

Nam K, Cui Q, Gao J, York DM. Nam K, et al. J Chem Theory Comput. 2007 Mar;3(2):486-504. doi: 10.1021/ct6002466. J Chem Theory Comput. 2007. PMID: 26637030

9

An Efficient Linear-Scaling Ewald Method for Long-Range Electrostatic Interactions in Combined QM/MM Calculations.

Nam K, Gao J, York DM. Nam K, et al. J Chem Theory Comput. 2005 Jan;1(1):2-13. doi: 10.1021/ct049941i. J Chem Theory Comput. 2005. PMID: 26641110

10

Catalytic hydrogen atom transfer from hydrosilanes to vinylarenes for hydrosilylation and polymerization.

Asgari P, Hua Y, Bokka A, Thiamsiri C, Prasitwatcharakorn W, Karedath A, Chen X, Sardar S, Yum K, Leem G, Pierce BS, Nam K, Gao J, Jeon J. Asgari P, et al. Among authors: nam k. Nat Catal. 2019 Feb;2:164-173. doi: 10.1038/s41929-018-0217-z. Epub 2019 Jan 28. Nat Catal. 2019. PMID: 31460492 Free PMC article.

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